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    ERCC6L2-AS1 ERCC6L2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100128782, updated on 10-Oct-2023

    Summary

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    Official Symbol
    ERCC6L2-AS1provided by HGNC
    Official Full Name
    ERCC6L2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:27858
    See related
    Ensembl:ENSG00000175611 AllianceGenome:HGNC:27858
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NAG11; NAG12; C9orf130; LINC00476
    Expression
    Ubiquitous expression in prostate (RPKM 1.4), ovary (RPKM 1.4) and 25 other tissues See more
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    Genomic context

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    See ERCC6L2-AS1 in Genome Data Viewer
    Location:
    9q22.32
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (95806088..95875977, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (107977446..108047347, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (98568370..98638259, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 8876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98431260-98432176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98432177-98433092 Neighboring gene proteasome subunit alpha 7 pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:98472872-98473055 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98499106-98499628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98499629-98500151 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110728 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20074 Neighboring gene uncharacterized LOC105376161 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98534876-98535833 Neighboring gene uncharacterized LOC107987103 Neighboring gene Sharpr-MPRA regulatory region 9073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28642 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:98596601-98597800 Neighboring gene uncharacterized LOC124902221 Neighboring gene Sharpr-MPRA regulatory region 6609 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28643 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28645 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:98637828-98638702 Neighboring gene RNA, U2 small nuclear 46, pseudogene Neighboring gene ERCC excision repair 6 like 2 Neighboring gene RNA, 5S ribosomal pseudogene 289 Neighboring gene PARK7 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. LINC00476 Suppresses the Progression of Non-Small Cell Lung Cancer by Inducing the Ubiquitination of SETDB1. Cui G, et al. Radiat Res, 2021 Mar 1. PMID 33370431
    2. DNA sequence and analysis of human chromosome 9. Humphray SJ, et al. Nature, 2004 May 27. PMID 15164053, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LINC00476 Suppresses the Progression of Non-Small Cell Lung Cancer by Inducing the Ubiquitination of SETDB1.
      Title: LINC00476 Suppresses the Progression of Non-Small Cell Lung Cancer by Inducing the Ubiquitination of SETDB1.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • long intergenic non-protein coding RNA 476
    • nasopharyngeal carcinoma-associated gene 12

    Clone Names

    • FLJ34818, FLJ34826

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_023389.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site at its 5' end, and includes alternate exon structure at its 3' end, compared to variant 1.
      Source sequence(s)
      AF194971, AL389954
      Related
      ENST00000321517.3

    2. NR_023390.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK092137, AK092145, AL354861, AL389954, BU687794

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      95806088..95875977 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      107977446..108047347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8WZB0.1 GenPept UniProtKB/Swiss-Prot:Q8WZB0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials