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    D630029K05Rik RIKEN cDNA D630029K05 gene [ Mus musculus (house mouse) ]

    Gene ID: 103175, updated on 8-Feb-2024

    Summary

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    Official Symbol
    D630029K05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D630029K05 geneprovided by MGI
    Primary source
    MGI:MGI:2143561
    See related
    Ensembl:ENSMUSG00000031294 AllianceGenome:MGI:2143561
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward kidney adult (RPKM 17.5) See more
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    Genomic context

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    See D630029K05Rik in Genome Data Viewer
    Location:
    10 D2; 10 64.99 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (116800645..116805013)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (116964740..116969108)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RAB3A interacting protein Neighboring gene predicted gene, 51782 Neighboring gene STARR-seq mESC enhancer starr_27967 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:116367664-116367817 Neighboring gene RIKEN cDNA 4933412E12 gene Neighboring gene STARR-positive B cell enhancer ABC_E10645 Neighboring gene predicted gene, 40768 Neighboring gene predicted gene 5781 Neighboring gene predicted gene, 46182 Neighboring gene bestrophin 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Y chromosomal noncoding RNAs regulate autosomal gene expression via piRNAs in mouse testis. Reddy HM, et al. BMC Biol, 2021 Sep 9. PMID 34503492, Free PMC Article
    2. Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. Aboudehen K, et al. J Biol Chem, 2018 Jun 15. PMID 29716997, Free PMC Article
    3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027846.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate 5' end, compared to variant 1.
      Source sequence(s)
      AK085456, AL589661, BX639172
      Related
      ENSMUST00000033651.4

    2. NR_027847.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK085456, AW475548, BB843438, BX639172

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      116800645..116805013
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_175330.2: Suppressed sequence

      Description
      NM_175330.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein Strain
    Heading Accession and Version

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