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    Yae1d1 Yae1 domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 67008, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Yae1d1provided by MGI
    Official Full Name
    Yae1 domain containing 1provided by MGI
    Primary source
    MGI:MGI:1914258
    See related
    Ensembl:ENSMUSG00000075054 AllianceGenome:MGI:1914258
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1600012F09Rik
    Summary
    Predicted to be involved in protein maturation by [4Fe-4S] cluster transfer. Orthologous to human YAE1 (YAE1 maturation factor of ABCE1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 10.6), heart adult (RPKM 9.7) and 25 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    13 A2; 13 6.05 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (18161225..18167936, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (17986640..17993351, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene v-ral simian leukemia viral oncogene A (ras related) Neighboring gene ADP-ribosylation factor 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_33767 Neighboring gene G patch domain and ankyrin repeats 1 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E7206 Neighboring gene voltage-dependent anion channel 3, pseudogene 1 Neighboring gene ZW10 interactor pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein maturation by [4Fe-4S] cluster transfer ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein YAE1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025904.3 → NP_080180.1  protein YAE1 homolog

      See identical proteins and their annotated locations for NP_080180.1

      Status: VALIDATED

      Source sequence(s)
      AK005425, CJ084672, CT009754
      Consensus CDS
      CCDS26256.1
      UniProtKB/TrEMBL
      Q9CS38, Q9D033, Q9D053, Q9DAY6
      Related
      ENSMUSP00000097324.5, ENSMUST00000099735.6
      Conserved Domains (2) summary
      COG1317
      Location:4 → 68
      FliH; Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular trafficking, secretion, and vesicular transport]
      pfam09811
      Location:44 → 82
      Yae1_N; Essential protein Yae1, N terminal

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      18161225..18167936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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