U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    roh reduction of Rh1 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 246602, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rohprovided by FlyBase
    Official Full Name
    reduction of Rh1provided by FlyBase
    Primary source
    FLYBASE:FBgn0250838
    Locus tag
    Dmel_CG30415
    See related
    AllianceGenome:FB:FBgn0250838
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-SAGE:Wang-079; CG30415; CG3487; Dmel\CG30415
    Summary
    Involved in rhodopsin biosynthetic process. Is expressed in adult head and adult heart. Used to study retinal degeneration. [provided by Alliance of Genome Resources, Apr 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    59D9-59D9; 2-102 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (23385464..23386463, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19272987..19273986, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene yellow-d2 Neighboring gene long non-coding RNA:CR44784 Neighboring gene uncharacterized protein Neighboring gene eukaryotic translation initiation factor 2B subunit delta Neighboring gene Myotubularin related protein 6 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Developmental regulation of canonical and small ORF translation from mRNAs. Patraquim P, et al. Genome Biol, 2020 May 29. PMID 32471506, Free PMC Article
    2. Genetic screen for regulators of lymph gland homeostasis and hemocyte maturation in Drosophila. Tan KL, et al. G3 (Bethesda), 2012 Mar. PMID 22413093, Free PMC Article
    3. A Fluorescence-Based Genetic Screen to Study Retinal Degeneration in Drosophila. Huang Y, et al. PLoS One, 2015. PMID 26659849, Free PMC Article
    4. Hundreds of putatively functional small open reading frames in Drosophila. Ladoukakis E, et al. Genome Biol, 2011 Nov 25. PMID 22118156, Free PMC Article
    5. The bHLH Transcription Factor Hand Regulates the Expression of Genes Critical to Heart and Muscle Function in Drosophila melanogaster. Hallier B, et al. PLoS One, 2015. PMID 26252215, Free PMC Article

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in rhodopsin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    reduction of Rh1
    Names
    CG30415-PA
    CG30415-PB
    anon-SAGE:Wang-079
    reduction of rh1
    roh-PA
    roh-PB

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      23385464..23386463 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_166600.3 → NP_726319.1  reduction of Rh1, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726319.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E8X7
      Related
      FBpp0071940

    2. NM_166599.3 → NP_726318.1  reduction of Rh1, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726318.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E8X7
      Related
      FBpp0071939
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0E8X7 Q0E8X7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous