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    BomS4 Bomanin Short 4 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37101, updated on 10-May-2024

    Summary

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    Official Symbol
    BomS4provided by FlyBase
    Official Full Name
    Bomanin Short 4provided by FlyBase
    Primary source
    FLYBASE:FBgn0034330
    Locus tag
    Dmel_CG18107
    See related
    AllianceGenome:FB:FBgn0034330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RH09147; Bom107; CG18107; Dmel\CG18107
    Summary
    Predicted to be involved in defense response. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See BomS4 in Genome Data Viewer
    Location:
    55C4-55C4; 2-85 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (18384567..18384911)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (14272072..14272416)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Bomanin Bicipital 1 Neighboring gene Bomanin Short 1 Neighboring gene Bomanin Bicipital 2 Neighboring gene Bomanin Short 2 Neighboring gene Bomanin Short 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Genetic Basis of Natural Variation in Drosophila melanogaster Immune Defense against Enterococcus faecalis. Chapman JR, et al. Genes (Basel), 2020 Feb 22. PMID 32098395, Free PMC Article
    2. Short-Form Bomanins Mediate Humoral Immunity in Drosophila. Lindsay SA, et al. J Innate Immun, 2018. PMID 29920489, Free PMC Article
    3. An effector Peptide family required for Drosophila toll-mediated immunity. Clemmons AW, et al. PLoS Pathog, 2015 Apr. PMID 25915418, Free PMC Article
    4. Shortened lifespan induced by a high-glucose diet is associated with intestinal immune dysfunction in Drosophila sechellia. Abe M, et al. J Exp Biol, 2022 Nov 1. PMID 36226701, Free PMC Article
    5. Large clusters of co-expressed genes in the Drosophila genome. Boutanaev AM, et al. Nature, 2002 Dec 12. PMID 12478293

    See all (40) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in defense response to Gram-positive bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to mycotoxin IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bomanin short 4
    Names
    BomS4-PA
    CG18107-PA
    bomanin 107
    bomanin S4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      18384567..18384911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_145336.3 → NP_663309.1  bomanin short 4 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_663309.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1ZB60, Q8SYA4
      Related
      FBpp0085844
      Conserved Domains (1) summary
      pfam08194
      Location:1 → 40
      DIM; DIM protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8SYA4 Q8SYA4

    Gene LinkOut

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