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    Gm525 predicted gene 525 [ Mus musculus (house mouse) ]

    Gene ID: 217071, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Gm525provided by MGI
    Official Full Name
    predicted gene 525provided by MGI
    Primary source
    MGI:MGI:2685371
    See related
    Ensembl:ENSMUSG00000072553 AllianceGenome:MGI:2685371
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in extracellular region. Orthologous to human C17orf67 (chromosome 17 open reading frame 67). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in thymus adult (RPKM 8.5), testis adult (RPKM 5.5) and 6 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Gm525 in Genome Data Viewer
    Location:
    11 C; 11 54.34 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (88957346..88983890)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (89073841..89093064)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9837 Neighboring gene predicted gene 11496 Neighboring gene tripartite motif-containing 25 Neighboring gene STARR-positive B cell enhancer ABC_E2363 Neighboring gene STARR-positive B cell enhancer ABC_E5263 Neighboring gene STARR-positive B cell enhancer ABC_E5264 Neighboring gene diacylglycerol kinase, epsilon Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:88919911-88920094 Neighboring gene STARR-positive B cell enhancer ABC_E1840 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:88927428-88927537 Neighboring gene STARR-seq mESC enhancer starr_30387 Neighboring gene diacylglycerol kinase, epsilon, opposite strand Neighboring gene STARR-positive B cell enhancer ABC_E7043 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:88938900-88939236 Neighboring gene STARR-positive B cell enhancer ABC_E8442 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:88956596-88956973 Neighboring gene predicted gene, 22534 Neighboring gene STARR-seq mESC enhancer starr_30389 Neighboring gene predicted gene, 38759 Neighboring gene predicted gene 11497

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C17orf67 homolog
    Names
    novel transcript

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033266.2 → NP_001028438.1  uncharacterized protein C17orf67 homolog precursor

      See identical proteins and their annotated locations for NP_001028438.1

      Status: VALIDATED

      Source sequence(s)
      AA237157, AW823710
      Consensus CDS
      CCDS36279.1
      UniProtKB/Swiss-Prot
      B2KGT0, Q3V3I5
      Related
      ENSMUSP00000098184.5, ENSMUST00000100619.11
      Conserved Domains (1) summary
      pfam15076
      Location:18 → 90
      DUF4543; Domain of unknown function (DUF4543)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      88957346..88983890
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156587.1 → XP_036012480.1  uncharacterized protein C17orf67 homolog isoform X1

      UniProtKB/Swiss-Prot
      B2KGT0, Q3V3I5
      Conserved Domains (1) summary
      pfam15076
      Location:18 → 90
      DUF4543; Domain of unknown function (DUF4543)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3V3I5.1 GenPept UniProtKB/Swiss-Prot:Q3V3I5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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