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    SYCP3 synaptonemal complex protein 3 [ Bos taurus (cattle) ]

    Gene ID: 615896, updated on 6-Jun-2024

    Summary

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    Official Symbol
    SYCP3provided by VGNC
    Official Full Name
    synaptonemal complex protein 3provided by VGNC
    Primary source
    VGNC:VGNC:56229
    See related
    BGD:BT14359; Ensembl:ENSBTAG00000002492
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SYCP3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (65541079..65548189, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345307 Neighboring gene choline phosphotransferase 1 Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene N-acetylglucosamine-1-phosphate transferase subunits alpha and beta Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene transfer RNA phenylalanine (anticodon AAA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC127286

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatid development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in synaptonemal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptonemal complex protein 3
    Names
    SCP-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040588.2 → NP_001035678.1  synaptonemal complex protein 3

      See identical proteins and their annotated locations for NP_001035678.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102433
      UniProtKB/Swiss-Prot
      Q3T0E2
      UniProtKB/TrEMBL
      A0A3Q1MAP4
      Related
      ENSBTAP00000027778.3, ENSBTAT00000027778.4
      Conserved Domains (1) summary
      pfam04803
      Location:84 → 203
      Cor1; Cor1/Xlr/Xmr conserved region

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      65541079..65548189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005206702.5 → XP_005206759.1  synaptonemal complex protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MAP4
      Related
      ENSBTAP00000071106.2, ENSBTAT00000066546.2
      Conserved Domains (1) summary
      pfam04803
      Location:84 → 203
      Cor1; Cor1/Xlr/Xmr conserved region

    2. XM_059886730.1 → XP_059742713.1  synaptonemal complex protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MAP4
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3T0E2.1 GenPept UniProtKB/Swiss-Prot:Q3T0E2

    Gene LinkOut

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