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    GNPTAB N-acetylglucosamine-1-phosphate transferase subunits alpha and beta [ Bos taurus (cattle) ]

    Gene ID: 509610, updated on 6-Jun-2024

    Summary

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    Official Symbol
    GNPTABprovided by VGNC
    Official Full Name
    N-acetylglucosamine-1-phosphate transferase subunits alpha and betaprovided by VGNC
    Primary source
    VGNC:VGNC:29479
    See related
    BGD:BT25635; Ensembl:ENSBTAG00000019409
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GNPTAB in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (65572215..65656010, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene choline phosphotransferase 1 Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene synaptonemal complex protein 3 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene uncharacterized LOC132345308 Neighboring gene transfer RNA phenylalanine (anticodon AAA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-glycan processing to lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in carbohydrate phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
    Names
    N-acetylglucosamine-1-phosphate transferase alpha and beta subunits
    NP_001179157.2
    XP_010803443.1
    XP_010803445.1
    XP_024847332.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192228.2 → NP_001179157.2  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      F1MPB1
      Related
      ENSBTAP00000025859.6, ENSBTAT00000025859.7
      Conserved Domains (6) summary
      pfam06464
      Location:699 → 809
      DMAP_binding; DMAP1-binding Domain
      pfam00066
      Location:436 → 469
      Notch; LNR domain
      pfam11380
      Location:322 → 429
      Stealth_CR2; Stealth protein CR2, conserved region 2
      pfam17101
      Location:73 → 101
      Stealth_CR1; Stealth protein CR1, conserved region 1
      pfam17102
      Location:948 → 996
      Stealth_CR3; Stealth protein CR3, conserved region 3
      pfam17103
      Location:1131 → 1187
      Stealth_CR4; Stealth protein CR4, conserved region 4

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      65572215..65656010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024991564.2 → XP_024847332.1  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LVS0
      Conserved Domains (6) summary
      pfam06464
      Location:627 → 737
      DMAP_binding; DMAP1-binding Domain
      pfam00066
      Location:364 → 397
      Notch; LNR domain
      pfam11380
      Location:250 → 357
      Stealth_CR2; Stealth protein CR2, conserved region 2
      pfam17101
      Location:1 → 29
      Stealth_CR1; Stealth protein CR1, conserved region 1
      pfam17102
      Location:876 → 924
      Stealth_CR3; Stealth protein CR3, conserved region 3
      pfam17103
      Location:1059 → 1115
      Stealth_CR4; Stealth protein CR4, conserved region 4

    2. XM_010805141.3 → XP_010803443.1  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M570, F1MPB1
      Related
      ENSBTAP00000063430.1, ENSBTAT00000074108.2
      Conserved Domains (6) summary
      pfam00066
      Location:435 → 469
      Notch; LNR domain
      pfam06464
      Location:699 → 809
      DMAP_binding; DMAP1-binding Domain
      pfam11380
      Location:322 → 429
      Stealth_CR2; Stealth protein CR2, conserved region 2
      pfam17101
      Location:73 → 101
      Stealth_CR1; Stealth protein CR1, conserved region 1
      pfam17102
      Location:948 → 996
      Stealth_CR3; Stealth protein CR3, conserved region 3
      pfam17103
      Location:1093 → 1149
      Stealth_CR4; Stealth protein CR4, conserved region 4

    3. XM_010805143.4 → XP_010803445.1  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LVS0
      Conserved Domains (5) summary
      pfam00066
      Location:203 → 237
      Notch; LNR domain
      pfam06464
      Location:467 → 577
      DMAP_binding; DMAP1-binding Domain
      pfam11380
      Location:90 → 197
      Stealth_CR2; Stealth protein CR2, conserved region 2
      pfam17102
      Location:716 → 764
      Stealth_CR3; Stealth protein CR3, conserved region 3
      pfam17103
      Location:899 → 955
      Stealth_CR4; Stealth protein CR4, conserved region 4
    Nucleotide Protein Strain
    Heading Accession and Version

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