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    SGPL1 sphingosine-1-phosphate lyase 1 [ Gallus gallus (chicken) ]

    Gene ID: 423714, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SGPL1provided by CGNC
    Official Full Name
    sphingosine-1-phosphate lyase 1provided by CGNC
    Primary source
    CGNC:52033
    See related
    Ensembl:ENSGALG00010020311
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SGPL1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (12300593..12328264)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (12346556..12374232)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene steroidogenic acute regulatory protein, mitochondrial-like Neighboring gene microsomal triglyceride transfer protein-like Neighboring gene uncharacterized LOC124418060 Neighboring gene pterin-4 alpha-carbinolamine dehydratase 1 Neighboring gene unc-5 netrin receptor B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphinganine-1-phosphate aldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carboxylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingolipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sphingosine-1-phosphate lyase 1
    NP_001007947.1
    XP_015143693.2
    XP_015143694.1
    XP_015143695.1
    XP_046776132.1
    XP_046776133.1
    XP_046776134.1
    XP_046776135.1
    XP_046798825.1
    XP_046798826.1
    XP_046798827.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007946.3 → NP_001007947.1  sphingosine-1-phosphate lyase 1

      See identical proteins and their annotated locations for NP_001007947.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000230
      UniProtKB/TrEMBL
      Q5ZMK8
      Conserved Domains (1) summary
      cd06450
      Location:138 → 500
      DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      12300593..12328264
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046942869.1 → XP_046798825.1  sphingosine-1-phosphate lyase 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZCP9

    2. XM_015288209.4 → XP_015143695.1  sphingosine-1-phosphate lyase 1 isoform X2

      UniProtKB/TrEMBL
      F1NMD8
      Related
      ENSGALP00010028981.1, ENSGALT00010049023.1
      Conserved Domains (1) summary
      cd06450
      Location:126 → 488
      DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...

    3. XM_046942870.1 → XP_046798826.1  sphingosine-1-phosphate lyase 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZCP9

    4. XM_015288207.4 → XP_015143693.2  sphingosine-1-phosphate lyase 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZCP9
      Related
      ENSGALP00010028980.1, ENSGALT00010049020.1
      Conserved Domains (1) summary
      cd06450
      Location:173 → 535
      DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...

    5. XM_046942871.1 → XP_046798827.1  sphingosine-1-phosphate lyase 1 isoform X2

      UniProtKB/TrEMBL
      F1NMD8

    6. XM_015288208.3 → XP_015143694.1  sphingosine-1-phosphate lyase 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZK58
      Related
      ENSGALP00010028979.1, ENSGALT00010049019.1
      Conserved Domains (1) summary
      cd06450
      Location:150 → 512
      DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      12346556..12374232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046920178.1 → XP_046776134.1  sphingosine-1-phosphate lyase 1 isoform X2

      UniProtKB/TrEMBL
      F1NMD8

    2. XM_046920176.1 → XP_046776132.1  sphingosine-1-phosphate lyase 1 isoform X4

    3. XM_046920179.1 → XP_046776135.1  sphingosine-1-phosphate lyase 1 isoform X2

      UniProtKB/TrEMBL
      F1NMD8

    4. XM_046920177.1 → XP_046776133.1  sphingosine-1-phosphate lyase 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZK58
    Nucleotide Protein Strain
    Heading Accession and Version

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