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    TOM1L2 target of myb1 like 2 membrane trafficking protein [ Gallus gallus (chicken) ]

    Gene ID: 416509, updated on 6-Jun-2024

    Summary

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    Symbol
    TOM1L2provided by CGNC
    Full Name
    target of myb1 like 2 membrane trafficking proteinprovided by CGNC
    Primary source
    CGNC:3639
    See related
    Ensembl:ENSGALG00010017556
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TOM1L2 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (4927096..4978180, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (4921790..4972862, complement)

    Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene sterol regulatory element binding transcription factor 1 Neighboring gene microRNA mir-33-2 Neighboring gene microRNA 1682 Neighboring gene uncharacterized LOC124417209 Neighboring gene dynein regulatory complex subunit 3 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2 Neighboring gene GID complex subunit 4 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Non-coding RNAs revealed during identification of genes involved in chicken immune responses. Ahanda ML, et al. Immunogenetics, 2009 Jan. PMID 19009289
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOM1-like protein 2
    Names
    target of myb1-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001270967.2 → NP_001257896.1  TOM1-like protein 2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000257
      UniProtKB/TrEMBL
      F1NIQ4
      Related
      ENSGALP00010024932.1, ENSGALT00010042442.1
      Conserved Domains (2) summary
      cd14238
      Location:218 → 309
      GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)
      cd16996
      Location:12 → 148
      VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4927096..4978180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015294182.4 → XP_015149668.1  TOM1-like protein 2 isoform X3

      UniProtKB/TrEMBL
      F1NIQ4
      Conserved Domains (2) summary
      cd14238
      Location:218 → 309
      GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)
      cd16996
      Location:12 → 148
      VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2

    2. XM_015294181.4 → XP_015149667.1  TOM1-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2TZG8
      Related
      ENSGALP00010024928.1, ENSGALT00010042438.1
      Conserved Domains (2) summary
      cd03565
      Location:12 → 152
      VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
      cd14238
      Location:218 → 309
      GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

    3. XM_015294180.4 → XP_015149666.1  TOM1-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TXR5
      Related
      ENSGALP00010024931.1, ENSGALT00010042441.1
      Conserved Domains (2) summary
      cd14238
      Location:218 → 309
      GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)
      cd16996
      Location:12 → 148
      VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4921790..4972862 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046927369.1 → XP_046783325.1  TOM1-like protein 2 isoform X3

      UniProtKB/TrEMBL
      F1NIQ4

    2. XM_046927368.1 → XP_046783324.1  TOM1-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2TZG8

    3. XM_046927367.1 → XP_046783323.1  TOM1-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TXR5
    Nucleotide Protein Strain
    Heading Accession and Version

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