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    CRISPLD1 cysteine rich secretory protein LCCL domain containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 395369, updated on 6-Jun-2024

    Summary

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    Symbol
    CRISPLD1provided by CGNC
    Full Name
    cysteine rich secretory protein LCCL domain containing 1provided by CGNC
    Primary source
    CGNC:11679
    See related
    Ensembl:ENSGALG00010003596
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CRISPLD1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (118195207..118234486)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (118197714..118236992)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112531867 Neighboring gene peptidase inhibitor 15 Neighboring gene hepatocyte nuclear factor 4 gamma Neighboring gene uncharacterized LOC107051826

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine-rich secretory protein LCCL domain-containing 1
    Names
    CocoaCrisp

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204654.3 → NP_989985.3  cysteine-rich secretory protein LCCL domain-containing 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000043
      UniProtKB/TrEMBL
      A0A8V0XGV7
      Related
      ENSGALP00010004933.1, ENSGALT00010008354.1
      Conserved Domains (2) summary
      smart00603
      Location:304 → 388
      LCCL; LCCL domain
      cd18813
      Location:62 → 207
      CAP_CRISPLD1; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of cysteine-rich secretory protein LCCL domain-containing 1

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      118195207..118234486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040675402.2 → XP_040531336.1  cysteine-rich secretory protein LCCL domain-containing 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XGV7
      Conserved Domains (2) summary
      smart00603
      Location:304 → 387
      LCCL; LCCL domain
      cd18813
      Location:62 → 207
      CAP_CRISPLD1; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of cysteine-rich secretory protein LCCL domain-containing 1

    2. XM_015282768.4 → XP_015138254.2  cysteine-rich secretory protein LCCL domain-containing 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XGV7
      Conserved Domains (2) summary
      smart00603
      Location:221 → 305
      LCCL; LCCL domain
      cl00133
      Location:3 → 124
      CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      118197714..118236992
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046910304.1 → XP_046766260.1  cysteine-rich secretory protein LCCL domain-containing 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XGV7

    2. XM_046910305.1 → XP_046766261.1  cysteine-rich secretory protein LCCL domain-containing 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XGV7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q98ST5.1 GenPept UniProtKB/Swiss-Prot:Q98ST5

    Gene LinkOut

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