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    TARP TCR gamma alternate reading frame protein [ Gallus gallus (chicken) ]

    Gene ID: 776306, updated on 18-Aug-2023

    Summary

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    Symbol
    TARPprovided by CGNC
    Full Name
    TCR gamma alternate reading frame proteinprovided by CGNC
    Primary source
    CGNC:57828
    See related
    Ensembl:ENSGALG00010017730
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    TCRGJ1; TCRGJ2; TCRGJ3
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    Genomic context

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    See TARP in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (49010712..49099826, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (49056176..49145351, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene integrin subunit alpha 9 Neighboring gene golgin A4 Neighboring gene LRR binding FLII interacting protein 2 Neighboring gene immunoglobulin lambda variable 5-37-like Neighboring gene T-cell receptor gamma chain V region PT-gamma-1/2-like Neighboring gene T-cell receptor gamma chain V region V108A-like Neighboring gene probable non-functional T cell receptor gamma variable 10 Neighboring gene probable non-functional T cell receptor gamma variable 10 Neighboring gene probable non-functional T cell receptor gamma variable 10 Neighboring gene T-cell receptor gamma chain V region V108B-like Neighboring gene probable non-functional T cell receptor gamma variable 10 Neighboring gene Ig kappa chain V-III region PC 4050-like Neighboring gene probable non-functional T cell receptor gamma variable 10 Neighboring gene Ig kappa chain V region 120-like Neighboring gene Ig kappa chain V-III region PC 4050-like Neighboring gene probable non-functional T cell receptor gamma variable 10 Neighboring gene Ig kappa chain V region 120-like Neighboring gene T cell receptor gamma variable 9-like Neighboring gene probable non-functional T cell receptor gamma variable 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ontogeny of the immune system: gamma/delta and alpha/beta T cells migrate from thymus to the periphery in alternating waves. Dunon D, et al. J Exp Med, 1997 Oct 6. PMID 9314548, Free PMC Article
    2. Characterization of avian T-cell receptor gamma genes. Six A, et al. Proc Natl Acad Sci U S A, 1996 Dec 24. PMID 8986811, Free PMC Article
    3. Identification and characterization of T-cell antigen receptor-related genes in phylogenetically diverse vertebrate species. Rast JP, et al. Immunogenetics, 1995. PMID 7642232

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    TCR gamma alternate reading frame protein
    Names
    T cell receptor gamma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001318455.1 → NP_001305384.1  TCR gamma alternate reading frame protein

      Status: PROVISIONAL

      Source sequence(s)
      U22666
      UniProtKB/TrEMBL
      A0A1D5PLB4
      Related
      ENSGALP00010025361.1, ENSGALT00010042871.1
      Conserved Domains (3) summary
      cd04982
      Location:55 → 170
      IgV_TCR_gamma; Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain
      smart00410
      Location:59 → 170
      IG_like; Immunoglobulin like
      cl11960
      Location:183 → 273
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      49010712..49099826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      49056176..49145351 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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