U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SDE2 SDE2 telomere maintenance homolog [ Gallus gallus (chicken) ]

    Gene ID: 421318, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SDE2provided by CGNC
    Official Full Name
    SDE2 telomere maintenance homologprovided by CGNC
    Primary source
    CGNC:7029
    See related
    Ensembl:ENSGALG00010017544
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    C1orf55; C3H1ORF55; dJ671D7.1
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SDE2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (16851211..16858790)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (16765745..16773324)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA binding domain containing 3 Neighboring gene uncharacterized LOC124417875 Neighboring gene H3.3 variant histone A Neighboring gene uncharacterized LOC121110400 Neighboring gene left-right determination factor 1 Neighboring gene transmembrane protein 63A

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    replication stress response regulator SDE2
    Names
    UPF0667 protein C1orf55
    protein SDE2 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      16851211..16858790
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046939560.1 → XP_046795516.1  replication stress response regulator SDE2 isoform X1

    2. XM_015283919.4 → XP_015139405.2  replication stress response regulator SDE2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YV06
      Related
      ENSGALP00010024898.1, ENSGALT00010042408.1
      Conserved Domains (1) summary
      cl28922
      Location:65 → 142
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      16765745..16773324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046915082.1 → XP_046771038.1  replication stress response regulator SDE2 isoform X1

    2. XM_040668132.2 → XP_040524066.1  replication stress response regulator SDE2 isoform X2

      Conserved Domains (1) summary
      cl28922
      Location:65 → 142
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials