CHD1W chromodomain helicase DNA binding protein 1W [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: CHD1Wprovided by CGNC
Official Full Name: chromodomain helicase DNA binding protein 1Wprovided by CGNC
Primary source: CGNC:84097
See related: Ensembl:ENSGALG00010012437
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: CHD1; CHDZ; CHD-1; CHD-W; CHDB1
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Genomic context

Location:: chromosome: W

Exon count:: 39

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	W	NC_052571.1 (5523892..5640037, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	W	NC_059535.1 (5523892..5640037, complement)

Chromosome W - NC_052571.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

CENP-H-containing complex facilitates deposition of newly synthesized CENP-A into centromeric chromatin in cooperation with FACT and CHD1.
Title: CENP-H-containing complex facilitates centromere deposition of CENP-A in cooperation with FACT and CHD1.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP-dependent chromatin remodeler activity	IEA Inferred from Electronic Annotation more info	PubMed
enables DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables chromatin binding	IEA Inferred from Electronic Annotation more info	PubMed
enables histone binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in nucleosome organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of chromatin	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: chromodomain-helicase-DNA-binding protein 1

Names: ATP-dependent helicase CHD1; chromo-helicase-DNA binding protein-W; chromodomain helicase DNA binding protein 1; chromodomain helicase DNA binding protein 1-W

NP_001383526.1

EC 3.6.4.12

XP_015155946.1

EC 3.6.4.12

XP_015155947.1

EC 3.6.4.12

XP_015155950.1

EC 3.6.4.12

XP_040511174.1

EC 3.6.4.12

XP_040511176.1

EC 3.6.4.12

XP_040511177.1

EC 3.6.4.12

XP_040511178.1

EC 3.6.4.12

XP_040511179.1

EC 3.6.4.12

XP_040511180.1

EC 3.6.4.12

XP_040511181.1

EC 3.6.4.12

XP_040511182.1

EC 3.6.4.12

XP_040511183.1

EC 3.6.4.12

XP_046790368.1

EC 3.6.4.12

XP_046790369.1

EC 3.6.4.12

XP_046790370.1

EC 3.6.4.12

XP_046790371.1

EC 3.6.4.12

XP_046790372.1

EC 3.6.4.12

XP_046790373.1

EC 3.6.4.12

XP_046790374.1

EC 3.6.4.12

XP_046790375.1

EC 3.6.4.12

XP_046790376.1

EC 3.6.4.12

XP_046790377.1

EC 3.6.4.12

XP_046790378.1

EC 3.6.4.12

XP_046790379.1

EC 3.6.4.12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001396597.1 → NP_001383526.1 chromodomain-helicase-DNA-binding protein 1

Status: VALIDATED

Source sequence(s)

JAENSK010000521

UniProtKB/TrEMBL

A0A8V0YHW3

Conserved Domains (4) summary

PLN03142
Location:450 → 986

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1680 → 1782

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:373 → 429

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:256 → 340

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052571.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

5523892..5640037 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040655246.2 → XP_040511180.1 chromodomain-helicase-DNA-binding protein 1 isoform X7

UniProtKB/TrEMBL

A0A8V0YHW3

Conserved Domains (5) summary

PLN03142
Location:422 → 958

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1638 → 1740

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:345 → 401

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:228 → 312

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

NF000535
Location:2 → 144

MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
XM_015300461.4 → XP_015155947.1 chromodomain-helicase-DNA-binding protein 1 isoform X5

UniProtKB/TrEMBL

A0A8V0YHW3

Conserved Domains (8) summary

cd00024
Location:264 → 313

CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...

cd00046
Location:458 → 603

DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

pfam00176
Location:442 → 723

SNF2_N; SNF2 family N-terminal domain

pfam00271
Location:761 → 860

Helicase_C; Helicase conserved C-terminal domain

pfam00385
Location:348 → 401

Chromo; Chromo (CHRromatin Organization MOdifier) domain

pfam08648
Location:1588 → 1702

DUF1777; Protein of unknown function (DUF1777)

pfam11496
Location:676 → 929

HDA2-3; Class II histone deacetylase complex subunits 2 and 3

pfam13907
Location:1451 → 1542

DUF4208; Domain of unknown function (DUF4208)
XM_040655243.2 → XP_040511177.1 chromodomain-helicase-DNA-binding protein 1 isoform X4

UniProtKB/TrEMBL

A0A8V0YEN5, A0A8V0YHW3

Related

ENSGALP00010017378.1, ENSGALT00010029843.1

Conserved Domains (4) summary

PLN03142
Location:428 → 964

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1658 → 1760

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:351 → 407

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:234 → 318

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
XM_015300464.4 → XP_015155950.1 chromodomain-helicase-DNA-binding protein 1 isoform X10

UniProtKB/TrEMBL

A0A8V0YEP1, A0A8V0YHW3

Related

ENSGALP00010017385.1, ENSGALT00010029856.1
XM_015300460.4 → XP_015155946.1 chromodomain-helicase-DNA-binding protein 1 isoform X2

UniProtKB/TrEMBL

A0A182C5Y8, A0A8V0YHW3, A0A8V0YMN8

Related

ENSGALP00010017380.1, ENSGALT00010029847.1

Conserved Domains (8) summary

cd00024
Location:286 → 335

CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...

cd00046
Location:480 → 625

DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

pfam00176
Location:464 → 745

SNF2_N; SNF2 family N-terminal domain

pfam00271
Location:783 → 882

Helicase_C; Helicase conserved C-terminal domain

pfam00385
Location:370 → 423

Chromo; Chromo (CHRromatin Organization MOdifier) domain

pfam08648
Location:1610 → 1724

DUF1777; Protein of unknown function (DUF1777)

pfam11496
Location:698 → 951

HDA2-3; Class II histone deacetylase complex subunits 2 and 3

pfam13907
Location:1473 → 1564

DUF4208; Domain of unknown function (DUF4208)
XM_040655242.2 → XP_040511176.1 chromodomain-helicase-DNA-binding protein 1 isoform X3

UniProtKB/TrEMBL

A0A8V0YHW3

Conserved Domains (4) summary

PLN03142
Location:450 → 986

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1666 → 1768

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:373 → 429

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:256 → 340

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
XM_040655247.2 → XP_040511181.1 chromodomain-helicase-DNA-binding protein 1 isoform X8

UniProtKB/TrEMBL

A0A8V0YHW3

Conserved Domains (4) summary

PLN03142
Location:450 → 986

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1598 → 1700

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:373 → 429

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:256 → 340

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
XM_040655245.2 → XP_040511179.1 chromodomain-helicase-DNA-binding protein 1 isoform X6

UniProtKB/TrEMBL

A0A8V0YHW3

Related

ENSGALP00010017382.1, ENSGALT00010029851.1

Conserved Domains (4) summary

PLN03142
Location:450 → 986

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1639 → 1741

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:373 → 429

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:256 → 340

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
XM_040655248.2 → XP_040511182.1 chromodomain-helicase-DNA-binding protein 1 isoform X9

UniProtKB/TrEMBL

A0A8V0YHW3

Conserved Domains (4) summary

PLN03142
Location:450 → 986

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1594 → 1696

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:373 → 429

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:256 → 340

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
XM_040655240.2 → XP_040511174.1 chromodomain-helicase-DNA-binding protein 1 isoform X1

UniProtKB/TrEMBL

A0A8V0YHW3

Conserved Domains (4) summary

PLN03142
Location:450 → 986

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1680 → 1782

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:373 → 429

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:256 → 340

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
XM_040655244.2 → XP_040511178.1 chromodomain-helicase-DNA-binding protein 1 isoform X4

UniProtKB/TrEMBL

A0A8V0YEN5, A0A8V0YHW3

Conserved Domains (4) summary

PLN03142
Location:428 → 964

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1658 → 1760

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:351 → 407

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:234 → 318

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
XM_040655249.2 → XP_040511183.1 chromodomain-helicase-DNA-binding protein 1 isoform X11

UniProtKB/TrEMBL

A0A8V0YMM9

Conserved Domains (4) summary

PLN03142
Location:187 → 723

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

TIGR01642
Location:1417 → 1519

U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

cd18661
Location:110 → 166

CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

cd18666
Location:1 → 77

CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_059535.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

5523892..5640037 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046934419.1 → XP_046790375.1 chromodomain-helicase-DNA-binding protein 1 isoform X7

UniProtKB/TrEMBL

A0A8V0YHW3
XM_046934417.1 → XP_046790373.1 chromodomain-helicase-DNA-binding protein 1 isoform X5

UniProtKB/TrEMBL

A0A8V0YHW3
XM_046934415.1 → XP_046790371.1 chromodomain-helicase-DNA-binding protein 1 isoform X4

UniProtKB/TrEMBL

A0A8V0YEN5, A0A8V0YHW3
XM_046934422.1 → XP_046790378.1 chromodomain-helicase-DNA-binding protein 1 isoform X10

UniProtKB/TrEMBL

A0A8V0YEP1, A0A8V0YHW3
XM_046934413.1 → XP_046790369.1 chromodomain-helicase-DNA-binding protein 1 isoform X2

UniProtKB/TrEMBL

A0A182C5Y8, A0A8V0YHW3, A0A8V0YMN8
XM_046934414.1 → XP_046790370.1 chromodomain-helicase-DNA-binding protein 1 isoform X3

UniProtKB/TrEMBL

A0A8V0YHW3
XM_046934420.1 → XP_046790376.1 chromodomain-helicase-DNA-binding protein 1 isoform X8

UniProtKB/TrEMBL

A0A8V0YHW3
XM_046934418.1 → XP_046790374.1 chromodomain-helicase-DNA-binding protein 1 isoform X6

UniProtKB/TrEMBL

A0A8V0YHW3
XM_046934421.1 → XP_046790377.1 chromodomain-helicase-DNA-binding protein 1 isoform X9

UniProtKB/TrEMBL

A0A8V0YHW3
XM_046934412.1 → XP_046790368.1 chromodomain-helicase-DNA-binding protein 1 isoform X1

UniProtKB/TrEMBL

A0A8V0YHW3
XM_046934416.1 → XP_046790372.1 chromodomain-helicase-DNA-binding protein 1 isoform X4

UniProtKB/TrEMBL

A0A8V0YEN5, A0A8V0YHW3
XM_046934423.1 → XP_046790379.1 chromodomain-helicase-DNA-binding protein 1 isoform X11

UniProtKB/TrEMBL

A0A8V0YMM9