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    4932414N04Rik RIKEN cDNA 4932414N04 gene [ Mus musculus (house mouse) ]

    Gene ID: 75721, updated on 8-Feb-2024

    Summary

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    Official Symbol
    4932414N04Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4932414N04 geneprovided by MGI
    Primary source
    MGI:MGI:1922971
    See related
    Ensembl:ENSMUSG00000079324 AllianceGenome:MGI:1922971
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 8.7) See more
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    Genomic context

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    See 4932414N04Rik in Genome Data Viewer
    Location:
    2 C2; 2 39.53 cM
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (68487135..68578876)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (68656791..68748532)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933409G03 gene Neighboring gene predicted gene, 36002 Neighboring gene predicted gene, 36231 Neighboring gene predicted gene, 36174 Neighboring gene predicted gene 13612

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC75721

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183113.3 → NP_898936.1  uncharacterized protein LOC75721

      See identical proteins and their annotated locations for NP_898936.1

      Status: VALIDATED

      Source sequence(s)
      AL844841, AL928873, BX293546
      Consensus CDS
      CCDS50598.1
      UniProtKB/TrEMBL
      H3BLH7, Q8CEQ9
      Related
      ENSMUSP00000135792.3, ENSMUST00000128259.9
      Conserved Domains (1) summary
      pfam12001
      Location:266 → 345
      DUF3496; Domain of unknown function (DUF3496)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      68487135..68578876
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006500335.3 → XP_006500398.1  uncharacterized protein LOC75721 isoform X1

      Conserved Domains (2) summary
      COG1196
      Location:456 → 687
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12001
      Location:620 → 699
      DUF3496; Domain of unknown function (DUF3496)

    2. XM_017319307.2 → XP_017174796.1  uncharacterized protein LOC75721 isoform X1

      Conserved Domains (2) summary
      COG1196
      Location:456 → 687
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12001
      Location:620 → 699
      DUF3496; Domain of unknown function (DUF3496)

    3. XM_006500336.2 → XP_006500399.1  uncharacterized protein LOC75721 isoform X2

      Conserved Domains (2) summary
      COG1196
      Location:431 → 662
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12001
      Location:595 → 674
      DUF3496; Domain of unknown function (DUF3496)

    4. XM_017319308.2 → XP_017174797.1  uncharacterized protein LOC75721 isoform X3

      Conserved Domains (2) summary
      COG1196
      Location:430 → 661
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12001
      Location:594 → 673
      DUF3496; Domain of unknown function (DUF3496)
    Nucleotide Protein Strain
    Heading Accession and Version

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