U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Msantd4 Myb/SANT DNA binding domain containing 4 with coiled-coils [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500941, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Msantd4provided by RGD
    Official Full Name
    Myb/SANT DNA binding domain containing 4 with coiled-coilsprovided by RGD
    Primary source
    RGD:1565380
    See related
    Ensembl:ENSRNOG00000022245 AllianceGenome:RGD:1565380
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in nucleus. Orthologous to human MSANTD4 (Myb/SANT DNA binding domain containing 4 with coiled-coils). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 194.9), Brain (RPKM 171.2) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Msantd4 in Genome Data Viewer
    Location:
    8q11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (9801921..9812529)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (1516979..1527587)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (1503018..1513626)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene kelch repeat and BTB domain containing 3 Neighboring gene zinc finger protein 431 like, pseudogene 4 Neighboring gene glutamate ionotropic receptor AMPA type subunit 4 Neighboring gene uncharacterized LOC120094073 Neighboring gene uncharacterized LOC134480139

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC105560

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    myb/SANT-like DNA-binding domain-containing protein 4
    Names
    Myb/SANT-like DNA-binding domain containing 4 with coiled-coils

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024357.1 → NP_001019528.1  myb/SANT-like DNA-binding domain-containing protein 4

      See identical proteins and their annotated locations for NP_001019528.1

      Status: PROVISIONAL

      Source sequence(s)
      BC096000
      UniProtKB/Swiss-Prot
      Q501L3
      UniProtKB/TrEMBL
      A6KQJ5
      Related
      ENSRNOP00000030251.3, ENSRNOT00000034482.5
      Conserved Domains (2) summary
      PTZ00266
      Location:223 → 313
      PTZ00266; NIMA-related protein kinase; Provisional
      pfam13873
      Location:8 → 86
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      9801921..9812529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063265957.1 → XP_063122027.1  myb/SANT-like DNA-binding domain-containing protein 4 isoform X1

      UniProtKB/Swiss-Prot
      Q501L3
      UniProtKB/TrEMBL
      A6KQJ5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q501L3.1 GenPept UniProtKB/Swiss-Prot:Q501L3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous