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    Mad2l1 mitotic arrest deficient 2 like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 297176, updated on 11-Apr-2024

    Summary

    Official Symbol
    Mad2l1provided by RGD
    Official Full Name
    mitotic arrest deficient 2 like 1provided by RGD
    Primary source
    RGD:1310889
    See related
    Ensembl:ENSRNOG00000005376 AllianceGenome:RGD:1310889
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable protein C-terminus binding activity and protein homodimerization activity. Predicted to be involved in several processes, including establishment of centrosome localization; negative regulation of protein metabolic process; and regulation of mitotic metaphase/anaphase transition. Predicted to act upstream of or within mitotic sister chromatid segregation and negative regulation of mitotic cell cycle. Predicted to be located in several cellular components, including chromosome, centromeric region; perinuclear region of cytoplasm; and spindle. Predicted to be part of nuclear pore nuclear basket. Predicted to be active in cytoplasm; kinetochore; and nucleoplasm. Orthologous to human MAD2L1 (mitotic arrest deficient 2 like 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Thymus (RPKM 122.1), Spleen (RPKM 62.5) and 9 other tissues See more
    Orthologs
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    Genomic context

    Location:
    4q31
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (97236419..97247603)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (95906692..95918885)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (97530993..97543179)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1, pseudogene 1 Neighboring gene high-mobility group box 1, pseudogene 19 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene vomeronasal 1 receptor 89 Neighboring gene G protein subunit gamma 12

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in chromosome, centromeric region ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in kinetochore IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in kinetochore ISO
    Inferred from Sequence Orthology
    more info
     
    part_of mitotic checkpoint complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitotic spindle ISO
    Inferred from Sequence Orthology
    more info
     
    part_of mitotic spindle assembly checkpoint MAD1-MAD2 complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore nuclear basket ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in spindle pole ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    mitotic spindle assembly checkpoint protein MAD2A
    Names
    MAD2 (mitotic arrest deficient, homolog)-like 1
    MAD2 mitotic arrest deficient-like 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106594.1NP_001100064.1  mitotic spindle assembly checkpoint protein MAD2A

      See identical proteins and their annotated locations for NP_001100064.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474042
      UniProtKB/TrEMBL
      A6KF36, D4ACM2
      Related
      ENSRNOP00000007285.4, ENSRNOT00000007285.6
      Conserved Domains (1) summary
      pfam02301
      Location:16191
      HORMA; HORMA domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      97236419..97247603
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006236621.4XP_006236683.1  mitotic spindle assembly checkpoint protein MAD2A isoform X1

      See identical proteins and their annotated locations for XP_006236683.1

      UniProtKB/TrEMBL
      A6KF36, D4ACM2
      Conserved Domains (1) summary
      pfam02301
      Location:16191
      HORMA; HORMA domain
    2. XM_006236619.3XP_006236681.1  mitotic spindle assembly checkpoint protein MAD2A isoform X1

      See identical proteins and their annotated locations for XP_006236681.1

      UniProtKB/TrEMBL
      A6KF36, D4ACM2
      Conserved Domains (1) summary
      pfam02301
      Location:16191
      HORMA; HORMA domain
    3. XM_006236620.3XP_006236682.1  mitotic spindle assembly checkpoint protein MAD2A isoform X1

      See identical proteins and their annotated locations for XP_006236682.1

      UniProtKB/TrEMBL
      A6KF36, D4ACM2
      Conserved Domains (1) summary
      pfam02301
      Location:16191
      HORMA; HORMA domain

    RNA

    1. XR_010065624.1 RNA Sequence