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    AT5G11500 coiled-coil protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831022, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G11500
    Gene description
    coiled-coil protein
    Primary source
    Araport:AT5G11500
    Locus tag
    AT5G11500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15N18.90; F15N18_90
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (3676548..3679738)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene adaptin family protein Neighboring gene myb domain protein 3r-4 Neighboring gene aspartate aminotransferase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
    2. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203362.1
    NM_121188.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil protein
    NP_001190291.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532).
    NP_196711.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3676548..3679738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203362.1 → NP_001190291.1  coiled-coil protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190291.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JXW2, Q8LA72, Q94K26
      Conserved Domains (2) summary
      pfam05670
      Location:12 → 99
      DUF814; Domain of unknown function (DUF814)
      cl03922
      Location:122 → 185
      V-ATPase_G; Vacuolar (H+)-ATPase G subunit

    2. NM_121188.3 → NP_196711.1  coiled-coil protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196711.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQS1, Q8LA72, Q94K26, Q9LYE1
      Conserved Domains (2) summary
      PTZ00266
      Location:114 → 182
      PTZ00266; NIMA-related protein kinase; Provisional
      pfam05670
      Location:1 → 112
      DUF814; Domain of unknown function (DUF814)
    Nucleotide Protein
    Heading Accession and Version

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