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    GPBP1 GC-rich promoter binding protein 1 [ Bos taurus (cattle) ]

    Gene ID: 613751, updated on 2-Jun-2024

    Summary

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    Official Symbol
    GPBP1provided by VGNC
    Official Full Name
    GC-rich promoter binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:29522
    See related
    Ensembl:ENSBTAG00000012124
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GPBP1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 20 NC_037347.1 (22017002..22082480, complement)

    Chromosome 20 - NC_037347.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-2285f-2 Neighboring gene stathmin-like pseudogene Neighboring gene uncharacterized LOC132343217 Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene uncharacterized LOC112443032

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037347.1 Chromosome 20 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139708

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vasculin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076287.1 → NP_001069755.1  vasculin

      See identical proteins and their annotated locations for NP_001069755.1

      Status: PROVISIONAL

      Source sequence(s)
      BC119942
      UniProtKB/Swiss-Prot
      Q0P5K1
      Related
      ENSBTAP00000016085.5, ENSBTAT00000016085.6
      Conserved Domains (1) summary
      pfam15337
      Location:377 → 456
      Vasculin; Vascular protein family Vasculin-like 1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037347.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22017002..22082480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059878785.1 → XP_059734768.1  vasculin isoform X2

      UniProtKB/Swiss-Prot
      Q0P5K1

    2. XM_059878784.1 → XP_059734767.1  vasculin isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MSL0
      Related
      ENSBTAP00000073069.1, ENSBTAT00000070304.2

    3. XM_059878783.1 → XP_059734766.1  vasculin isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MSL0

    4. XM_024981386.2 → XP_024837154.1  vasculin isoform X3

      Conserved Domains (1) summary
      pfam15337
      Location:206 → 285
      Vasculin; Vascular protein family Vasculin-like 1

    5. XM_005221503.4 → XP_005221560.1  vasculin isoform X2

      See identical proteins and their annotated locations for XP_005221560.1

      UniProtKB/Swiss-Prot
      Q0P5K1
      Conserved Domains (1) summary
      pfam15337
      Location:377 → 456
      Vasculin; Vascular protein family Vasculin-like 1

    6. XM_005221502.4 → XP_005221559.1  vasculin isoform X1

      See identical proteins and their annotated locations for XP_005221559.1

      UniProtKB/TrEMBL
      A0A3Q1MSL0
      Conserved Domains (1) summary
      pfam15337
      Location:397 → 477
      Vasculin; Vascular protein family Vasculin-like 1

    7. XM_024981384.2 → XP_024837152.1  vasculin isoform X2

      UniProtKB/Swiss-Prot
      Q0P5K1
      Conserved Domains (1) summary
      pfam15337
      Location:377 → 456
      Vasculin; Vascular protein family Vasculin-like 1

    8. XM_010816763.2 → XP_010815065.1  vasculin isoform X1

      See identical proteins and their annotated locations for XP_010815065.1

      UniProtKB/TrEMBL
      A0A3Q1MSL0
      Conserved Domains (1) summary
      pfam15337
      Location:397 → 477
      Vasculin; Vascular protein family Vasculin-like 1

    9. XM_010816760.4 → XP_010815062.1  vasculin isoform X1

      See identical proteins and their annotated locations for XP_010815062.1

      UniProtKB/TrEMBL
      A0A3Q1MSL0
      Conserved Domains (1) summary
      pfam15337
      Location:397 → 477
      Vasculin; Vascular protein family Vasculin-like 1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0P5K1.1 GenPept UniProtKB/Swiss-Prot:Q0P5K1

    Gene LinkOut

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