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    PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [ Bos taurus (cattle) ]

    Gene ID: 505807, updated on 5-Mar-2024

    Summary

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    Gene symbol
    PCMTD2
    Gene description
    protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
    See related
    BGD:BT14008; Ensembl:ENSBTAG00000031715
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    PCMTD1; C20orf36
    Orthologs
    human mouse all
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    Genomic context

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    See PCMTD2 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (53602922..53670209, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene chromosome 8 open reading frame, human C9orf85 pseudogene Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene GINS complex subunit 1 Neighboring gene craniofacial development protein 2-like Neighboring gene uncharacterized LOC132346925 Neighboring gene myelin transcription factor 1 Neighboring gene neuropeptides B and W receptor 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139967

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein-L-isoaspartate O-methyltransferase domain-containing protein 2
    Names
    protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024479.2 → NP_001019650.1  protein-L-isoaspartate O-methyltransferase domain-containing protein 2

      See identical proteins and their annotated locations for NP_001019650.1

      Status: PROVISIONAL

      Source sequence(s)
      BC119984
      UniProtKB/Swiss-Prot
      Q0VCV2, Q58CZ2
      Related
      ENSBTAP00000088743.1, ENSBTAT00000102653.1
      Conserved Domains (1) summary
      cl28095
      Location:11 → 219
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      53602922..53670209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059892463.1 → XP_059748446.1  protein-L-isoaspartate O-methyltransferase domain-containing protein 2 isoform X4

    2. XM_059892464.1 → XP_059748447.1  protein-L-isoaspartate O-methyltransferase domain-containing protein 2 isoform X5

    3. XM_059892461.1 → XP_059748444.1  protein-L-isoaspartate O-methyltransferase domain-containing protein 2 isoform X1

      Related
      ENSBTAP00000081065.1, ENSBTAT00000123466.1

    4. XM_005214563.5 → XP_005214620.1  protein-L-isoaspartate O-methyltransferase domain-containing protein 2 isoform X2

      See identical proteins and their annotated locations for XP_005214620.1

      UniProtKB/Swiss-Prot
      Q0VCV2, Q58CZ2
      Related
      ENSBTAP00000042405.5, ENSBTAT00000044968.5
      Conserved Domains (1) summary
      cl28095
      Location:11 → 219
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

    5. XM_059892462.1 → XP_059748445.1  protein-L-isoaspartate O-methyltransferase domain-containing protein 2 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q58CZ2.1 GenPept UniProtKB/Swiss-Prot:Q58CZ2

    Gene LinkOut

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