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    ZBTB40 zinc finger and BTB domain containing 40 [ Bos taurus (cattle) ]

    Gene ID: 534714, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ZBTB40provided by VGNC
    Official Full Name
    zinc finger and BTB domain containing 40provided by VGNC
    Primary source
    VGNC:VGNC:37079
    See related
    BGD:BT16823; Ensembl:ENSBTAG00000016448
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (130295700..130374031, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343612 Neighboring gene uncharacterized LOC112443417 Neighboring gene microRNA mir-2284u Neighboring gene uncharacterized LOC112442449 Neighboring gene Wnt family member 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206061.1 → NP_001192990.1  zinc finger and BTB domain-containing protein 40

      See identical proteins and their annotated locations for NP_001192990.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000002
      UniProtKB/TrEMBL
      F1N193
      Related
      ENSBTAP00000103627.1, ENSBTAT00000106006.1
      Conserved Domains (6) summary
      smart00225
      Location:25 → 116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:850 → 1102
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:834 → 854
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:948 → 966
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19 → 113
      BTB; BTB/POZ domain
      pfam13465
      Location:903 → 928
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      130295700..130374031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005203212.5 → XP_005203269.1  zinc finger and BTB domain-containing protein 40 isoform X1

      See identical proteins and their annotated locations for XP_005203269.1

      Conserved Domains (4) summary
      COG5048
      Location:855 → 1107
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:839 → 859
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:953 → 971
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19 → 113
      BTB; BTB/POZ domain

    2. XM_005203210.5 → XP_005203267.1  zinc finger and BTB domain-containing protein 40 isoform X1

      See identical proteins and their annotated locations for XP_005203267.1

      Conserved Domains (4) summary
      COG5048
      Location:855 → 1107
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:839 → 859
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:953 → 971
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19 → 113
      BTB; BTB/POZ domain

    3. XM_059875365.1 → XP_059731348.1  zinc finger and BTB domain-containing protein 40 isoform X4

    4. XM_024975817.2 → XP_024831585.1  zinc finger and BTB domain-containing protein 40 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:855 → 1125
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:839 → 859
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:953 → 971
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19 → 113
      BTB; BTB/POZ domain

    5. XM_005203209.5 → XP_005203266.1  zinc finger and BTB domain-containing protein 40 isoform X1

      See identical proteins and their annotated locations for XP_005203266.1

      Conserved Domains (4) summary
      COG5048
      Location:855 → 1107
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:839 → 859
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:953 → 971
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19 → 113
      BTB; BTB/POZ domain

    6. XM_024975803.2 → XP_024831571.1  zinc finger and BTB domain-containing protein 40 isoform X1

      Related
      ENSBTAP00000021869.6, ENSBTAT00000021869.7
      Conserved Domains (4) summary
      COG5048
      Location:855 → 1107
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:839 → 859
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:953 → 971
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19 → 113
      BTB; BTB/POZ domain

    7. XM_024975805.2 → XP_024831573.1  zinc finger and BTB domain-containing protein 40 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:855 → 1107
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:839 → 859
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:953 → 971
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:19 → 113
      BTB; BTB/POZ domain

    8. XM_059875363.1 → XP_059731346.1  zinc finger and BTB domain-containing protein 40 isoform X3

      Related
      ENSBTAP00000089258.1, ENSBTAT00000101172.1
    Nucleotide Protein Strain
    Heading Accession and Version

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