U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Platr25 pluripotency associated transcript 25 [ Mus musculus (house mouse) ]

    Gene ID: 435366, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Platr25provided by MGI
    Official Full Name
    pluripotency associated transcript 25provided by MGI
    Primary source
    MGI:MGI:3645613
    See related
    Ensembl:ENSMUSG00000074863 AllianceGenome:MGI:3645613
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm5665; EG435366; 6720490N10Rik
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Platr25 in Genome Data Viewer
    Location:
    13 B3; 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (62819598..62909816, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (62671784..62762002, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 1008 Neighboring gene STARR-positive B cell enhancer mm9_chr13:62725440-62725741 Neighboring gene predicted gene, 36298 Neighboring gene STARR-seq mESC enhancer starr_34777 Neighboring gene STARR-seq mESC enhancer starr_34778 Neighboring gene STARR-positive B cell enhancer mm9_chr13:62786016-62786317 Neighboring gene calcium binding and coiled-coil domain 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_34780 Neighboring gene STARR-positive B cell enhancer ABC_E4073 Neighboring gene STARR-seq mESC enhancer starr_34782 Neighboring gene microRNA 713 Neighboring gene prothymosin alpha-like Neighboring gene STARR-positive B cell enhancer ABC_E1878 Neighboring gene predicted gene 5141 Neighboring gene predicted gene, 25448

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Bergmann JH, et al. Genome Res, 2015 Sep. PMID 26048247, Free PMC Article
    2. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    3. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    pluripotency associated transcript 25; zinc finger protein 782

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      62819598..62909816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055019620.1 → XP_054875595.1  zinc finger protein 782 isoform X2

    2. XM_055019621.1 → XP_054875596.1  zinc finger protein 782 isoform X2

    3. XM_055019622.1 → XP_054875597.1  zinc finger protein 782 isoform X2

    4. XM_055019619.1 → XP_054875594.1  zinc finger protein 782 isoform X2

    5. XM_055019625.1 → XP_054875600.1  zinc finger protein 782 isoform X3

    6. XM_055019616.1 → XP_054875591.1  zinc finger protein 782 isoform X2

    7. XM_055019618.1 → XP_054875593.1  zinc finger protein 782 isoform X2

    8. XM_055019617.1 → XP_054875592.1  zinc finger protein 782 isoform X2

    9. XM_055019630.1 → XP_054875605.1  zinc finger protein 782 isoform X6

      UniProtKB/TrEMBL
      A0A1Y7VIZ1
      Related
      ENSMUSP00000152199.2, ENSMUST00000220733.2

    10. XM_055019628.1 → XP_054875603.1  zinc finger protein 782 isoform X4

    11. XM_055019627.1 → XP_054875602.1  zinc finger protein 782 isoform X4

    12. XM_055019623.1 → XP_054875598.1  zinc finger protein 782 isoform X2

    13. XM_055019626.1 → XP_054875601.1  zinc finger protein 782 isoform X3

    14. XM_055019624.1 → XP_054875599.1  zinc finger protein 782 isoform X2

    15. XM_055019631.1 → XP_054875606.1  zinc finger protein 782 isoform X7

      UniProtKB/TrEMBL
      A0A1Y7VIS4
      Related
      ENSMUSP00000152117.2, ENSMUST00000221996.2

    16. XM_055019629.1 → XP_054875604.1  zinc finger protein 782 isoform X5

    17. XM_055019615.1 → XP_054875590.1  zinc finger protein 782 isoform X1

      Related
      ENSMUSP00000152582.2, ENSMUST00000222477.2

    18. XM_055019634.1 → XP_054875609.1  zinc finger protein 782 isoform X8

      UniProtKB/TrEMBL
      A0A1Y7VLS7
      Related
      ENSMUSP00000152625.2, ENSMUST00000222602.2

    19. XM_055019633.1 → XP_054875608.1  zinc finger protein 782 isoform X8

      UniProtKB/TrEMBL
      A0A1Y7VLS7

    20. XM_055019632.1 → XP_054875607.1  zinc finger protein 782 isoform X8

      UniProtKB/TrEMBL
      A0A1Y7VLS7

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001013825.2: Suppressed sequence

      Description
      NM_001013825.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.