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    Zfand3 zinc finger AN1-type containing 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361816, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Zfand3provided by RGD
    Official Full Name
    zinc finger AN1-type containing 3provided by RGD
    Primary source
    RGD:1307113
    See related
    Ensembl:ENSRNOG00000059659 AllianceGenome:RGD:1307113
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tex27
    Summary
    Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human ZFAND3 (zinc finger AN1-type containing 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Muscle (RPKM 277.4), Heart (RPKM 208.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfand3 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (8084898..8281093)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (8083407..8279617)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (8693989..8892572)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120098917 Neighboring gene uncharacterized LOC120098952 Neighboring gene uncharacterized LOC134483873 Neighboring gene BTB domain containing 9 Neighboring gene uncharacterized LOC120098951

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AN1-type zinc finger protein 3
    Names
    testis expressed gene 27
    testis-expressed protein 27
    testis-expressed sequence 27
    zinc finger, AN1-type domain 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012175.1 → NP_001012175.1  AN1-type zinc finger protein 3

      See identical proteins and their annotated locations for NP_001012175.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085956
      UniProtKB/Swiss-Prot
      Q5U2M7
      UniProtKB/TrEMBL
      A0A0G2JV07
      Related
      ENSRNOP00000069304.2, ENSRNOT00000085131.2
      Conserved Domains (3) summary
      pfam01428
      Location:160 → 194
      zf-AN1; AN1-like Zinc finger
      pfam01754
      Location:19 → 36
      zf-A20; A20-like zinc finger
      pfam16972
      Location:44 → 93
      TipE; Na+ channel auxiliary subunit TipE

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      8084898..8281093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5U2M7.1 GenPept UniProtKB/Swiss-Prot:Q5U2M7

    Gene LinkOut

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