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    Plac9 placenta associated 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361105, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Plac9provided by RGD
    Official Full Name
    placenta associated 9provided by RGD
    Primary source
    RGD:1306662
    See related
    Ensembl:ENSRNOG00000011263 AllianceGenome:RGD:1306662
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human PLAC9 (placenta associated 9). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 236.4), Muscle (RPKM 43.5) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Plac9 in Genome Data Viewer
    Location:
    16p16
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (1466231..1481060, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (1459450..1474275, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (3851107..3866008)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene dCTP pyrophosphatase 1, pseudogene 2 Neighboring gene annexin A11 Neighboring gene uncharacterized LOC134482312 Neighboring gene transmembrane protein 254

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    placenta-specific protein 9
    Names
    placenta-specific 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108395.2 → NP_001101865.2  placenta-specific protein 9 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      D4A4Q7
      Related
      ENSRNOP00000014964.5, ENSRNOT00000014964.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      1466231..1481060 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039094614.2 → XP_038950542.1  placenta-specific protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AT08
      Related
      ENSRNOP00000097622.1
      Conserved Domains (1) summary
      pfam15205
      Location:54 → 127
      PLAC9; Placenta-specific protein 9
    Nucleotide Protein Strain
    Heading Accession and Version

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