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    HABP4 hyaluronan binding protein 4 [ Canis lupus familiaris (dog) ]

    Gene ID: 484133, updated on 5-Mar-2024

    Summary

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    Official Symbol
    HABP4provided by VGNC
    Official Full Name
    hyaluronan binding protein 4provided by VGNC
    Primary source
    VGNC:VGNC:41581
    See related
    Ensembl:ENSCAFG00845003506
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (70638461..70681245, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (71102548..71145168, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (70925886..70968739, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (70451726..70494546, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (70214850..70257618, complement)

    Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111096328 Neighboring gene uncharacterized LOC119879582 Neighboring gene cell division cycle 14B Neighboring gene uncharacterized LOC102157082 Neighboring gene U6 spliceosomal RNA Neighboring gene ER lumen protein-retaining receptor 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intracellular hyaluronan-binding protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051805.1 Reference ROS_Cfam_1.0

      Range
      70638461..70681245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038654935.1 → XP_038510863.1  intracellular hyaluronan-binding protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0L9K7, A0A8C0MUC5, A0A8I3MQM2
      Related
      ENSCAFP00845004963.1, ENSCAFT00845006251.1
      Conserved Domains (2) summary
      pfam04774
      Location:215 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 166
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_038654934.1 → XP_038510862.1  intracellular hyaluronan-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L9K7, A0A8C0MUC5, A0A8I3MQM2
      Conserved Domains (2) summary
      pfam04774
      Location:216 → 313
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 167
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049261.1 Alternate UMICH_Zoey_3.1

      Range
      70451726..70494546 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038466153.1 → XP_038322081.1  intracellular hyaluronan-binding protein 4 isoform X2

      Conserved Domains (2) summary
      pfam04774
      Location:215 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 166
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_038466152.1 → XP_038322080.1  intracellular hyaluronan-binding protein 4 isoform X1

      Conserved Domains (2) summary
      pfam04774
      Location:216 → 313
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 167
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

      Range
      70214850..70257618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038591140.1 → XP_038447068.1  intracellular hyaluronan-binding protein 4 isoform X2

      Conserved Domains (2) summary
      pfam04774
      Location:215 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 166
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_038591139.1 → XP_038447067.1  intracellular hyaluronan-binding protein 4 isoform X1

      Conserved Domains (2) summary
      pfam04774
      Location:216 → 313
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 167
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

      Range
      70925886..70968739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038526840.1 → XP_038382768.1  intracellular hyaluronan-binding protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0L9K7, A0A8C0MUC5, A0A8I3MQM2
      Conserved Domains (2) summary
      pfam04774
      Location:215 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 166
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_038526839.1 → XP_038382767.1  intracellular hyaluronan-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L9K7, A0A8C0MUC5, A0A8I3MQM2
      Conserved Domains (2) summary
      pfam04774
      Location:216 → 313
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 167
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      71102548..71145168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038560578.1 → XP_038416506.1  intracellular hyaluronan-binding protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0L9K7, A0A8C0MUC5, A0A8I3MQM2
      Conserved Domains (2) summary
      pfam04774
      Location:215 → 312
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 166
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    2. XM_038560567.1 → XP_038416495.1  intracellular hyaluronan-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L9K7, A0A8C0MUC5, A0A8I3MQM2
      Conserved Domains (2) summary
      pfam04774
      Location:216 → 313
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:18 → 167
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal
    Nucleotide Protein
    Heading Accession and Version

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