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    SUPT3H SPT3 homolog, SAGA and STAGA complex component [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703447, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SUPT3Hprovided by VGNC
    Official Full Name
    SPT3 homolog, SAGA and STAGA complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:78055
    See related
    Ensembl:ENSMMUG00000021377
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SUPT3H in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (123983574..124510693)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (45946687..46477572, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114677601 Neighboring gene chloride intracellular channel 5 Neighboring gene U6 spliceosomal RNA Neighboring gene RUNX family transcription factor 2 Neighboring gene pre-mRNA-splicing factor RBM22-like Neighboring gene microRNA mir-586 Neighboring gene uncharacterized LOC106997952 Neighboring gene cell division cycle 5 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation protein SPT3 homolog
    Names
    suppressor of Ty 3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266569.1 → NP_001253498.1  transcription initiation protein SPT3 homolog

      See identical proteins and their annotated locations for NP_001253498.1

      Status: PROVISIONAL

      Source sequence(s)
      JV048467
      UniProtKB/TrEMBL
      A0A5K1VGN2, F7FHY4, H9G0V2
      Related
      ENSMMUP00000028158.4, ENSMMUT00000030088.4
      Conserved Domains (1) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      123983574..124510693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028846740.1 → XP_028702573.1  transcription initiation protein SPT3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A5K1VGN2, F7FHY4, H9G0V2
      Conserved Domains (1) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    2. XM_015136392.2 → XP_014991878.1  transcription initiation protein SPT3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A5K1VGN2, F7FHY4, H9G0V2
      Conserved Domains (1) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    3. XM_028846738.1 → XP_028702571.1  transcription initiation protein SPT3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A5K1VGN2, F7FHY4, H9G0V2
      Conserved Domains (1) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    4. XM_015136391.2 → XP_014991877.1  transcription initiation protein SPT3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A5K1VGN2, F7FHY4, H9G0V2
      Conserved Domains (1) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    5. XM_028846735.1 → XP_028702568.1  transcription initiation protein SPT3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A5K1VGN2, F7FHY4, H9G0V2
      Conserved Domains (1) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    6. XM_028846737.1 → XP_028702570.1  transcription initiation protein SPT3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A5K1VGN2, F7FHY4, H9G0V2
      Conserved Domains (1) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    7. XM_028846736.1 → XP_028702569.1  transcription initiation protein SPT3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A5K1VGN2, F7FHY4, H9G0V2
      Related
      ENSMMUP00000047924.2, ENSMMUT00000059024.2
      Conserved Domains (1) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    8. XM_028846739.1 → XP_028702572.1  transcription initiation protein SPT3 homolog isoform X2

      UniProtKB/TrEMBL
      A0A5K1VGN2
      Conserved Domains (1) summary
      cl02174
      Location:1 → 30
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    Nucleotide Protein
    Heading Accession and Version

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