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    C3h15orf48 similar to human chromosome 15 open reading frame 48 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302884, updated on 30-Mar-2024

    Summary

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    Official Symbol
    C3h15orf48provided by RGD
    Official Full Name
    similar to human chromosome 15 open reading frame 48provided by RGD
    Primary source
    RGD:1359583
    See related
    Ensembl:ENSRNOG00000067060 AllianceGenome:RGD:1359583
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Nmes1
    Summary
    Predicted to act upstream of or within response to bacterium. Predicted to be located in nucleus. Predicted to be part of mitochondrial respiratory chain complex IV. Orthologous to human C15orf48 (chromosome 15 open reading frame 48). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 173.2), Spleen (RPKM 94.1) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    3q35
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (130173535..130177088)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (109719952..109723505)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (114772603..114776156)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene glycine amidinotransferase Neighboring gene AFG2 AAA ATPase homolog B Neighboring gene microRNA 147 Neighboring gene solute carrier family 30 member 4 Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A novel gene, NMES1, downregulated in human esophageal squamous cell carcinoma. Zhou J, et al. Int J Cancer, 2002 Oct 1. PMID 12209954
    2. Impact of lactobacilli on orally acquired listeriosis. Archambaud C, et al. Proc Natl Acad Sci U S A, 2012 Oct 9. PMID 23012479, Free PMC Article
    3. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC105649

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to bacterium ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of mitochondrial respiratory chain complex IV IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    normal mucosa of esophagus-specific gene 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008518.2 → NP_001008518.1  normal mucosa of esophagus-specific gene 1 protein

      See identical proteins and their annotated locations for NP_001008518.1

      Status: VALIDATED

      Source sequence(s)
      BC086337, CB585387
      UniProtKB/Swiss-Prot
      Q5RK28
      Related
      ENSRNOT00000118485.1
      Conserved Domains (1) summary
      pfam06522
      Location:9 → 76
      B12D; NADH-ubiquinone reductase complex 1 MLRQ subunit

    2. NM_001395676.1 → NP_001382605.1  normal mucosa of esophagus-specific gene 1 protein

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      Q5RK28
      Conserved Domains (1) summary
      pfam06522
      Location:9 → 76
      B12D; NADH-ubiquinone reductase complex 1 MLRQ subunit

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      130173535..130177088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5RK28.1 GenPept UniProtKB/Swiss-Prot:Q5RK28

    Gene LinkOut

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