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    gfi-1 ET module [ Caenorhabditis elegans ]

    Gene ID: 179022, updated on 7-Sep-2023

    Summary

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    Gene symbol
    gfi-1
    Gene description
    ET module
    Primary source
    WormBase:WBGene00001581
    Locus tag
    CELE_F57F4.3
    See related
    AllianceGenome:WB:WBGene00001581
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in chromatin remodeling. Located in membrane raft. Is expressed in I1L; I1R; RIH; and intestine. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (6392537..6399931, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Filaggrin-2-like Neighboring gene HotDog ACOT-type domain-containing protein Neighboring gene bacterial colonization factor Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of GPI-anchored proteins involved in germline stem cell proliferation in the Caenorhabditis elegans germline stem cell niche. Rikitake M, et al. J Biochem, 2020 Dec 26. PMID 32844210
    2. Galectin LEC-6 interacts with glycoprotein F57F4.4 to cooperatively regulate the growth of Caenorhabditis elegans. Takeuchi T, et al. Biol Pharm Bull, 2011. PMID 21720028
    3. A regulated response to impaired respiration slows behavioral rates and increases lifespan in Caenorhabditis elegans. Cristina D, et al. PLoS Genet, 2009 Apr. PMID 19360127, Free PMC Article
    4. Caenorhabditis elegans galectins LEC-6 and LEC-10 interact with similar glycoconjugates in the intestine. Maduzia LL, et al. J Biol Chem, 2011 Feb 11. PMID 21115491, Free PMC Article
    5. Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans. Cui M, et al. PLoS Genet, 2006 May. PMID 16710447, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in chromatin remodeling IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane raft HDA PubMed 

    General protein information

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    Preferred Names
    ET module
    NP_504626.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      6392537..6399931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072225.6 → NP_504626.1  ET module [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504626.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94246
      Conserved Domains (1) summary
      pfam01684
      Location:1401 → 1480
      ET; ET module
    Nucleotide Protein
    Heading Accession and Version

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