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    FAM162A family with sequence similarity 162 member A [ Homo sapiens (human) ]

    Gene ID: 26355, updated on 23-Nov-2021

    Summary

    Official Symbol
    FAM162Aprovided by HGNC
    Official Full Name
    family with sequence similarity 162 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:17865
    See related
    Ensembl:ENSG00000114023 MIM:608017
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    E2IG5; HGTD-P; C3orf28
    Expression
    Ubiquitous expression in colon (RPKM 86.7), esophagus (RPKM 60.9) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See FAM162A in Genome Data Viewer
    Location:
    3q21.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (122384182..122412334)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (122103029..122131181)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene cystatin A Neighboring gene HNF4 motif-containing MPRA enhancer 1/2 Neighboring gene mitochondrial matrix import factor 23 Neighboring gene WDR5B divergent transcript Neighboring gene WD repeat domain 5B Neighboring gene karyopherin subunit alpha 1 Neighboring gene uncharacterized LOC107984000

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.
    GeneReviews: Not available

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
     

    General protein information

    Preferred Names
    protein FAM162A
    Names
    E2-induced gene 5 protein
    HIF-1 alpha-responsive proapoptotic molecule
    growth and transformation-dependent protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_014367.4NP_055182.3  protein FAM162A

      See identical proteins and their annotated locations for NP_055182.3

      Status: VALIDATED

      Source sequence(s)
      AC083798, AF201944, AF250321, BI460077
      Consensus CDS
      CCDS43139.1
      UniProtKB/Swiss-Prot
      Q96A26
      UniProtKB/TrEMBL
      Q9H2P1
      Related
      ENSP00000419088.1, ENST00000477892.5
      Conserved Domains (1) summary
      pfam06388
      Location:33152
      DUF1075; Protein of unknown function (DUF1075)

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

      Range
      122384182..122412334
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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