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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_201637.3 → NP_963999.2 chromodomain-helicase-DNA-binding protein 8
See identical proteins and their annotated locations for NP_963999.2
Status: REVIEWED
- Source sequence(s)
-
AC126037, AC159323
- Consensus CDS
-
CCDS36919.1
- UniProtKB/Swiss-Prot
- Q09XV5, Q3TV89, Q5I1Z2, Q6ZPM8
- Related
- ENSMUSP00000142890.2, ENSMUST00000200169.6
- Conserved Domains (6) summary
-
- smart00592
Location:2312 → 2356
- BRK; domain in transcription and CHROMO domain helicases
- cd00024
Location:646 → 706
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:832 → 981
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam00176
Location:816 → 1103
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1135 → 1249
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:727 → 783
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000080.7 Reference GRCm39 C57BL/6J
- Range
-
52435608..52495499 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011245165.4 → XP_011243467.3 chromodomain-helicase-DNA-binding protein 8 isoform X1
- Conserved Domains (7) summary
-
- PTZ00121
Location:449 → 624
- PTZ00121; MAEBL; Provisional
- PLN03142
Location:812 → 1411
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- cd18663
Location:723 → 781
- CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
- cd18668
Location:640 → 705
- CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
- pfam07533
Location:2320 → 2362
- BRK; BRK domain
- cl28899
Location:813 → 1034
- DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
- cl41773
Location:61 → 421
- SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001010928.1: Suppressed sequence
- Description
- NM_001010928.1: This RefSeq was permanently suppressed because the CDS was partial, and there is another valid RefSeq representing this locus.