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    tpcn1 two pore segment channel 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100497529, updated on 8-Mar-2024

    Summary

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    Official Symbol
    tpcn1provided by Xenbase
    Official Full Name
    two pore segment channel 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-984919
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (145289259..145313230)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (132781971..132806377)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 54 Neighboring gene RBPJ interacting and tubulin associated 1 Neighboring gene IQ motif containing D Neighboring gene mediator complex subunit 13-like Neighboring gene MGC75582, possible similarity to act2 Neighboring gene uncharacterized LOC116406820

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables voltage-gated channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    two pore calcium channel protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      145289259..145313230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012969890.3 → XP_012825344.2  two pore calcium channel protein 1

      UniProtKB/TrEMBL
      A0A6I8QGK0, A0A8J0SMJ5
      Conserved Domains (1) summary
      pfam00520
      Location:432 → 683
      Ion_trans; Ion transport protein

    2. XM_012969894.3 → XP_012825348.2  two pore calcium channel protein 1

      UniProtKB/TrEMBL
      A0A6I8QGK0, A0A8J0SMJ5
      Conserved Domains (1) summary
      pfam00520
      Location:432 → 683
      Ion_trans; Ion transport protein

    3. XM_012969900.3 → XP_012825354.2  two pore calcium channel protein 1

      UniProtKB/TrEMBL
      A0A6I8QGK0, A0A8J0SMJ5
      Conserved Domains (1) summary
      pfam00520
      Location:432 → 683
      Ion_trans; Ion transport protein

    4. XM_012969901.3 → XP_012825355.2  two pore calcium channel protein 1

      UniProtKB/TrEMBL
      A0A6I8QGK0, A0A8J0SMJ5
      Conserved Domains (1) summary
      pfam00520
      Location:432 → 683
      Ion_trans; Ion transport protein
    Nucleotide Protein Strain
    Heading Accession and Version

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