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    Gm46430 predicted gene, 46430 [ Mus musculus (house mouse) ]

    Gene ID: 108168101, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Gm46430provided by MGI
    Official Full Name
    predicted gene, 46430provided by MGI
    Primary source
    MGI:MGI:5826067
    See related
    Ensembl:ENSMUSG00000113204 AllianceGenome:MGI:5826067
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in CNS E11.5 (RPKM 2.9), bladder adult (RPKM 2.8) and 24 other tissues See more
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    Genomic context

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    Location:
    13 C1; 13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (74751620..74766083, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (74604421..74617966, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene upstream binding transcription factor, RNA polymerase I pseudogene Neighboring gene stomatin (Epb7.2)-like 2 pseudogene Neighboring gene predicted gene, 57808 Neighboring gene STARR-seq mESC enhancer starr_35022 Neighboring gene predicted gene, 57809 Neighboring gene STARR-seq mESC enhancer starr_35023 Neighboring gene STARR-positive B cell enhancer ABC_E10801 Neighboring gene endoplasmic reticulum aminopeptidase 1 Neighboring gene calpastatin Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC108168101

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378681.1 → NP_001365610.1  uncharacterized protein LOC108168101

      Status: VALIDATED

      Source sequence(s)
      CT009718
      Related
      ENSMUST00000220929.3
      Conserved Domains (4) summary
      COG5048
      Location:114 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:319 → 339
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:359 → 384
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      74751620..74766083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157830.1 → XP_036013723.1  uncharacterized protein LOC108168101 isoform X3

      Conserved Domains (3) summary
      COG5048
      Location:64 → 305
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:269 → 289
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:309 → 334
      zf-H2C2_2; Zinc-finger double domain

    2. XM_036157829.1 → XP_036013722.1  uncharacterized protein LOC108168101 isoform X3

      Conserved Domains (3) summary
      COG5048
      Location:64 → 305
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:269 → 289
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:309 → 334
      zf-H2C2_2; Zinc-finger double domain

    3. XM_036157828.1 → XP_036013721.1  uncharacterized protein LOC108168101 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:114 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:319 → 339
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:359 → 384
      zf-H2C2_2; Zinc-finger double domain

    4. XM_030247505.2 → XP_030103365.1  uncharacterized protein LOC108168101 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:96 → 337
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:301 → 321
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box
      pfam13465
      Location:341 → 366
      zf-H2C2_2; Zinc-finger double domain

    5. XM_017315690.3 → XP_017171179.1  uncharacterized protein LOC108168101 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:114 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:319 → 339
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:359 → 384
      zf-H2C2_2; Zinc-finger double domain

    6. XM_030247504.2 → XP_030103364.1  uncharacterized protein LOC108168101 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:114 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:319 → 339
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:359 → 384
      zf-H2C2_2; Zinc-finger double domain

    7. XM_017315687.3 → XP_017171176.1  uncharacterized protein LOC108168101 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:114 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:319 → 339
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:359 → 384
      zf-H2C2_2; Zinc-finger double domain

    8. XM_017315692.3 → XP_017171181.1  uncharacterized protein LOC108168101 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:96 → 337
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:301 → 321
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box
      pfam13465
      Location:341 → 366
      zf-H2C2_2; Zinc-finger double domain

    9. XM_017315691.3 → XP_017171180.1  uncharacterized protein LOC108168101 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:114 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:319 → 339
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:359 → 384
      zf-H2C2_2; Zinc-finger double domain

    10. XM_017315693.3 → XP_017171182.1  uncharacterized protein LOC108168101 isoform X3

      Conserved Domains (3) summary
      COG5048
      Location:64 → 305
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:269 → 289
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:309 → 334
      zf-H2C2_2; Zinc-finger double domain

    11. XM_017315688.3 → XP_017171177.1  uncharacterized protein LOC108168101 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:114 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:319 → 339
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:359 → 384
      zf-H2C2_2; Zinc-finger double domain

    12. XM_036157827.1 → XP_036013720.1  uncharacterized protein LOC108168101 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:114 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:319 → 339
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:359 → 384
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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