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    Pdxdc1 pyridoxal dependent decarboxylase domain containing 1 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100772549, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Pdxdc1
    Gene description
    pyridoxal dependent decarboxylase domain containing 1
    See related
    Ensembl:ENSCGRG00015026364
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
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    Genomic context

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    See Pdxdc1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613911.1 (1547951..1610471)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (75013289..75076144, complement)

    NW_003613911.1Genomic Context describing neighboring genes Neighboring gene bMERB domain containing 1 Neighboring gene uncharacterized LOC103163744 Neighboring gene MARCKS-related protein-like Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene uncharacterized LOC118239654 Neighboring gene N-terminal asparagine amidase Neighboring gene RRN3 homolog, RNA polymerase I transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbon-carbon lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carboxylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyridoxal-dependent decarboxylase domain-containing protein 1
    Names
    Pyridoxal-dependent decarboxylase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613911.1 Reference CriGri_1.0 Primary Assembly

      Range
      1547951..1610471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027436779.2 → XP_027292580.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8C2N5M0, A0A9J7EVU9

    2. XM_003502743.2 → XP_003502791.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_003502791.1

      UniProtKB/TrEMBL
      A0A8C2N2C7, G3HFN7
      Conserved Domains (1) summary
      cl18945
      Location:172 → 394
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    3. XM_007643368.2 → XP_007641558.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

      See identical proteins and their annotated locations for XP_007641558.1

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J224
      Conserved Domains (1) summary
      cl18945
      Location:157 → 379
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    4. XM_016975756.1 → XP_016831245.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J6C5

    5. XM_016975754.2 → XP_016831243.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J4C5

    6. XM_027436780.2 → XP_027292581.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A061INK1, A0A8C2N5M0

    7. XM_007643367.4 → XP_007641557.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

      See identical proteins and their annotated locations for XP_007641557.1

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J224
      Conserved Domains (1) summary
      cl18945
      Location:157 → 379
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    8. XM_016975755.3 → XP_016831244.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J6C5

    9. XM_035456070.1 → XP_035311961.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7HD73
      Conserved Domains (1) summary
      cl18945
      Location:82 → 304
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NW_023276807.1 Alternate CriGri-PICRH-1.0

      Range
      75013289..75076144 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027387900.2 → XP_027243701.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8C2N5M0, A0A9J7EVU9
      Related
      ENSCGRP00015035104.1, ENSCGRT00015042768.2

    2. XM_027387894.2 → XP_027243695.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C2N2C7, G3HFN7
      Related
      ENSCGRP00015035143.2, ENSCGRT00015042811.2

    3. XM_027387899.2 → XP_027243700.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J6C5

    4. XM_027387897.2 → XP_027243698.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J224
      Conserved Domains (1) summary
      cl18945
      Location:157 → 379
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    5. XM_035452768.1 → XP_035308659.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7KC49
      Conserved Domains (1) summary
      cl18945
      Location:115 → 337
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    6. XM_027387898.2 → XP_027243699.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J6C5

    7. XM_035452767.1 → XP_035308658.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J224
      Conserved Domains (1) summary
      cl18945
      Location:157 → 379
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    8. XM_027387896.1 → XP_027243697.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J224
      Related
      ENSCGRP00015035124.2, ENSCGRT00015042792.2
      Conserved Domains (1) summary
      cl18945
      Location:157 → 379
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    9. XM_035452769.1 → XP_035308660.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7HD73
      Conserved Domains (1) summary
      cl18945
      Location:82 → 304
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    10. XM_027387895.2 → XP_027243696.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C2N2C7, A0A9J7J4C5

    11. XM_027387901.2 → XP_027243702.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A061INK1, A0A8C2N5M0
    Nucleotide Protein Strain
    Heading Accession and Version

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