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    Trnp1 TMF1-regulated nuclear protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 69539, updated on 23-Jun-2021

    Summary

    Official Symbol
    Trnp1provided by MGI
    Official Full Name
    TMF1-regulated nuclear protein 1provided by MGI
    Primary source
    MGI:MGI:1916789
    See related
    Ensembl:ENSMUSG00000056596
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Trnp; 2300002D11Rik
    Expression
    Biased expression in cerebellum adult (RPKM 22.7), frontal lobe adult (RPKM 21.3) and 13 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Trnp1 in Genome Data Viewer
    Location:
    4; 4 D2.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (133218408..133226446, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (133491097..133499645, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (133047015..133054465, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 42322 Neighboring gene predicted gene 13257 Neighboring gene terminal nucleotidyltransferase 5B Neighboring gene predicted gene, 42323 Neighboring gene keratinocyte differentiation factor 1 Neighboring gene nudC nuclear distribution protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC57108

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    colocalizes_with euchromatin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    TMF-regulated nuclear protein 1
    Names
    mexneurin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081156.2NP_001074625.1  TMF-regulated nuclear protein 1

      See identical proteins and their annotated locations for NP_001074625.1

      Status: VALIDATED

      Source sequence(s)
      AW120970, BB579578, BC049168
      Consensus CDS
      CCDS38904.1
      UniProtKB/Swiss-Prot
      Q80ZI1
      Related
      ENSMUSP00000129613.2, ENSMUST00000125541.2
      Conserved Domains (1) summary
      cl22856
      Location:106167
      SNARE; SNARE motif

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      133218408..133226446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539155.4XP_006539218.1  TMF-regulated nuclear protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006539218.1

      UniProtKB/Swiss-Prot
      Q80ZI1
      Conserved Domains (1) summary
      cl22856
      Location:106167
      SNARE; SNARE motif
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