U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Zbtb5 zinc finger and BTB domain containing 5 [ Arvicola amphibius (Eurasian water vole) ]

    Gene ID: 119826755, updated on 21-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Zbtb5
    Gene description
    zinc finger and BTB domain containing 5
    See related
    EnsemblRapid:ENSAAPG00005011055
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arvicola amphibius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Zbtb5 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current mArvAmp1.2 (GCF_903992535.2) 11 NC_052057.2 (97329968..97353472, complement)
    100 previous assembly mArvAmp1.1 (GCF_903992535.1) 11 NC_052057.1 (82038110..82061614)

    Chromosome 11 - NC_052057.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119826552 Neighboring gene glyoxylate and hydroxypyruvate reductase Neighboring gene RNA polymerase I subunit E Neighboring gene F-box protein 10 Neighboring gene translocase of outer mitochondrial membrane 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger and BTB domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mArvAmp1.2

    Genomic

    1. NC_052057.2 Reference mArvAmp1.2

      Range
      97329968..97353472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038348236.1 → XP_038204164.1  zinc finger and BTB domain-containing protein 5

      Conserved Domains (3) summary
      sd00017
      Location:608 → 628
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18196
      Location:3 → 128
      BTB_POZ_ZBTB5; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 5 (ZBTB5)
      pfam13465
      Location:622 → 645
      zf-H2C2_2; Zinc-finger double domain

    2. XM_038348235.1 → XP_038204163.1  zinc finger and BTB domain-containing protein 5

      Related
      ENSAAPP00005033277.1, ENSAAPT00005035394.1
      Conserved Domains (3) summary
      sd00017
      Location:608 → 628
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18196
      Location:3 → 128
      BTB_POZ_ZBTB5; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 5 (ZBTB5)
      pfam13465
      Location:622 → 645
      zf-H2C2_2; Zinc-finger double domain

    3. XM_042055994.1 → XP_041911928.1  zinc finger and BTB domain-containing protein 5

      Related
      ENSAAPP00005033376.1, ENSAAPT00005038970.1
      Conserved Domains (3) summary
      sd00017
      Location:608 → 628
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18196
      Location:3 → 128
      BTB_POZ_ZBTB5; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 5 (ZBTB5)
      pfam13465
      Location:622 → 645
      zf-H2C2_2; Zinc-finger double domain

    4. XM_038348238.1 → XP_038204166.1  zinc finger and BTB domain-containing protein 5

      Related
      ENSAAPP00005014209.1, ENSAAPT00005015586.2
      Conserved Domains (3) summary
      sd00017
      Location:608 → 628
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18196
      Location:3 → 128
      BTB_POZ_ZBTB5; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 5 (ZBTB5)
      pfam13465
      Location:622 → 645
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.