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    HDC histidine decarboxylase [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7443541, updated on 21-Dec-2023

    Summary

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    Gene symbol
    HDC
    Gene description
    histidine decarboxylase
    Locus tag
    THAPSDRAFT_14389
    Gene type
    protein coding
    RNA name
    histidine decarboxylase
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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    Genomic context

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    See HDC in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Sequence:
    Chromosome: 9; NC_012072.1 (507419..508623)

    Chromosome 9 - NC_012072.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012072.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbon-carbon lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carboxylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    histidine decarboxylase
    XP_002292250.1
    • I got to this gene under the Alanine and aspartate metobolism category in KEGG. Putative function: synthesizes histamine from histidine.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012072.1 Reference assembly

      Range
      507419..508623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002292214.1 → XP_002292250.1  histidine decarboxylase, partial [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002292250.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8C857
      Conserved Domains (1) summary
      PLN03032
      Location:1 → 366
      PLN03032; serine decarboxylase; Provisional
    Nucleotide Protein
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