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    TMEM123-DT TMEM123 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101928424, updated on 10-Oct-2023

    Summary

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    Official Symbol
    TMEM123-DTprovided by HGNC
    Official Full Name
    TMEM123 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55502
    See related
    Ensembl:ENSG00000255337 AllianceGenome:HGNC:55502
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in colon (RPKM 14.4), stomach (RPKM 13.8) and 21 other tissues See more
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    Genomic context

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    Location:
    11q22.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (102452919..102462038)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (102455046..102464163)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (102323650..102332769)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5441 Neighboring gene baculoviral IAP repeat containing 2 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:102245101-102245686 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:102245687-102246271 Neighboring gene transmembrane protein 123 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5442 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:102299689-102299866 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5444 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5445 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5446 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5447 Neighboring gene uncharacterized LOC124902740 Neighboring gene uncharacterized LOC102723838 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3862 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_18559 Neighboring gene matrix metallopeptidase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135053.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI015709, AI823313, AW015982, BX104024, CR741883
      Related
      ENST00000528717.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      102452919..102462038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      102455046..102464163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases