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    LOC4345367 lipid phosphate phosphatase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345367, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4345367
    Gene description
    lipid phosphate phosphatase 2
    Locus tag
    OSNPB_080359200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 48.1), flowers (RPKM 33.8) and 6 other tissues See more
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    Genomic context

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    See LOC4345367 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (16519519..16523975, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene thylakoid membrane protein slr0575 Neighboring gene lipid phosphate phosphatase 2 Neighboring gene uncharacterized LOC4345368 Neighboring gene Uncharacterized protein Os08g0359500

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipid phosphate phosphatase 2
    Names
    Os08g0359200
    P0488B06.38-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      16519519..16523975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795458.2 → XP_015650944.1  lipid phosphate phosphatase 2

      UniProtKB/TrEMBL
      Q0J672, Q6YZK2
      Conserved Domains (1) summary
      PLN02250
      Location:1 → 302
      PLN02250; lipid phosphate phosphatase

    2. XM_015795457.2 → XP_015650943.1  lipid phosphate phosphatase 2

      UniProtKB/TrEMBL
      Q0J672, Q6YZK2
      Conserved Domains (1) summary
      PLN02250
      Location:1 → 302
      PLN02250; lipid phosphate phosphatase

    3. XM_015795456.2 → XP_015650942.1  lipid phosphate phosphatase 2

      UniProtKB/TrEMBL
      Q0J672, Q6YZK2
      Conserved Domains (1) summary
      PLN02250
      Location:1 → 302
      PLN02250; lipid phosphate phosphatase

    4. XM_026020084.1 → XP_025875869.1  lipid phosphate phosphatase 2

      UniProtKB/TrEMBL
      Q0J672, Q6YZK2
      Conserved Domains (1) summary
      PLN02250
      Location:1 → 302
      PLN02250; lipid phosphate phosphatase
    Nucleotide Protein
    Heading Accession and Version

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