U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    HLA-DRB7 major histocompatibility complex, class II, DR beta 7 (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 3129, updated on 11-Nov-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    HLA-DRB7provided by HGNC
    Official Full Name
    major histocompatibility complex, class II, DR beta 7 (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:4955
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Annotation information
    Annotation category: only annotated on alternate loci in reference assembly
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    6p21.3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 (ALT_REF_LOCI_3) NT_167245.2 (3770665..3789002)
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 (ALT_REF_LOCI_4) NT_167246.2 (3946223..3964587)
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 (ALT_REF_LOCI_7) NT_167249.2 (3935314..3954816, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 Unlocalized Scaffold (ALT_REF_LOCI_3) NT_167245.1 (3776250..3794587)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 Unlocalized Scaffold (ALT_REF_LOCI_4) NT_167246.1 (3951843..3970207)

    NT_167245.2Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex, class II, DR alpha Neighboring gene MPRA-validated peak5756 silencer Neighboring gene protein FAM136A-like Neighboring gene HLA class II histocompatibility antigen, DR beta 4 chain-like Neighboring gene major histocompatibility complex, class II, DR beta 1 Neighboring gene major histocompatibility complex, class II, DQ alpha 1

    NT_167246.2Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DR beta 4 chain-like Neighboring gene protein FAM136A-like Neighboring gene protein activator of interferon induced protein kinase EIF2AK2 pseudogene 1 Neighboring gene major histocompatibility complex, class II, DR beta 1 Neighboring gene major histocompatibility complex, class II, DQ alpha 1

    NT_167249.2Genomic Context describing neighboring genes Neighboring gene protein FAM136A-like Neighboring gene protein activator of interferon induced protein kinase EIF2AK2 pseudogene 1 Neighboring gene family with sequence similarity 8 member A5, pseudogene Neighboring gene major histocompatibility complex, class II, DR beta 1 Neighboring gene major histocompatibility complex, class II, DQ alpha 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterization of an HLA DR beta pseudogene. Larhammar D, et al. Proc Natl Acad Sci U S A, 1985 Mar. PMID 3856276, Free PMC Article
    2. Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project. Horton R, et al. Immunogenetics, 2008 Jan. PMID 18193213, Free PMC Article
    3. Transduction of the human gene FAM8A1 by endogenous retrovirus during primate evolution. Jamain S, et al. Genomics, 2001 Nov. PMID 11707071
    4. Nomenclature for factors of the HLA system, 1991. WHO Nomenclature Committee for factors of the HLA system. Bodmer JG, et al. Tissue Antigens, 1992 Apr. PMID 1529427
    5. Initial sequencing and analysis of the human genome. Lander ES, et al. Nature, 2001 Feb 15. PMID 11237011

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

    Go to the top of the page Help

    Markers

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_056117.1 

      Range
      101..18438
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 ALT_REF_LOCI_3

    Genomic

    1. NT_167245.2 Reference GRCh38.p14 ALT_REF_LOCI_3

      Range
      3770665..3789002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_4

    Genomic

    1. NT_167246.2 Reference GRCh38.p14 ALT_REF_LOCI_4

      Range
      3946223..3964587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_7

    Genomic

    1. NT_167249.2 Reference GRCh38.p14 ALT_REF_LOCI_7

      Range
      3935314..3954816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases