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    Endo16 calcium-binding protein [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 373279, updated on 22-May-2022

    Summary

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    Gene symbol
    Endo16
    Gene description
    calcium-binding protein
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145602.1 (2179815..2192280, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003576993.1 (571916..584195)

    NW_022145602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115925142 Neighboring gene neurotrypsin Neighboring gene BLOC-1-related complex subunit 5 Neighboring gene transmembrane protein 216

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites. Balhoff JP, et al. Proc Natl Acad Sci U S A, 2005 Jun 14. PMID 15937122, Free PMC Article
    2. Alternative splicing of the Endo16 transcript produces differentially expressed mRNAs during sea urchin gastrulation. Godin RE, et al. Dev Biol, 1996 Oct 10. PMID 8873760
    3. Complexity and organization of DNA-protein interactions in the 5'-regulatory region of an endoderm-specific marker gene in the sea urchin embryo. Yuh CH, et al. Mech Dev, 1994 Aug. PMID 7811639
    4. Endo16, a lineage-specific protein of the sea urchin embryo, is first expressed just prior to gastrulation. Nocente-McGrath C, et al. Dev Biol, 1989 Nov. PMID 2680683
    5. Endo16, a large multidomain protein found on the surface and ECM of endodermal cells during sea urchin gastrulation, binds calcium. Soltysik-Española M, et al. Dev Biol, 1994 Sep. PMID 8088452

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein ENDO16
    Names
    endoderm-specific marker
    extracellular protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214519.1 → NP_999684.1  protein ENDO16 precursor

      See identical proteins and their annotated locations for NP_999684.1

      Status: PROVISIONAL

      Source sequence(s)
      L34680
      UniProtKB/TrEMBL
      Q26644
      Conserved Domains (1) summary
      cd08523
      Location:34 → 172
      Reeler_cohesin_like; Domains similar to the eukaryotic reeler domain and bacterial cohesins

    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145602.1 Reference Spur_5.0 Primary Assembly

      Range
      2179815..2192280 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P13665.2 GenPept UniProtKB/Swiss-Prot:P13665

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