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    LOC4344764 uncharacterized LOC4344764 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344764, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344764
    Gene description
    uncharacterized LOC4344764
    Locus tag
    OSNPB_080169600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 30.3), roots before flowering (RPKM 27.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (4065400..4069282)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene 7-deoxyloganetin glucosyltransferase-like Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene thyroid adenoma-associated protein homolog Neighboring gene haloacid dehalogenase-like hydrolase domain-containing protein 3 Neighboring gene disease resistance protein PIK5-NP

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of elongin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344764
    Names
    Os08g0169600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4065400..4069282
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794524.2 → XP_015650010.1  uncharacterized protein LOC4344764

      Conserved Domains (1) summary
      pfam06881
      Location:26 → 135
      Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A
    Nucleotide Protein
    Heading Accession and Version

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