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    EXJ42_gp1 hypothetical polyprotein [ Diatom colony associated ssRNA virus 1 ]

    Gene ID: 41700516, updated on 1-Aug-2022

    Summary

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    Gene symbol
    EXJ42_gp1
    Gene description
    hypothetical polyprotein
    Locus tag
    EXJ42_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Diatom colony associated ssRNA virus 1
    Lineage
    Viruses; Riboviria; Flaviviridae
    Old locus tag
    RVD_040
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    Genomic context

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    Sequence:
    NC_040589.1 (19..11259)

    NC_040589.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_040589.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FLDS: A Comprehensive dsRNA Sequencing Method for Intracellular RNA Virus Surveillance. Urayama S, et al. Microbes Environ, 2016. PMID 26877136, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    hypothetical polyprotein
    YP_009552082.1
    • containing putative helicase and putative RNA-dependent RNA polymerase domains

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_040589.1 Reference assembly

      Range
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009552082.1 hypothetical polyprotein [Diatom colony associated ssRNA virus 1]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A146J6H5
      Conserved Domains (3) summary
      smart00487
      Location:386 → 519
      DEXDc; DEAD-like helicases superfamily
      COG1643
      Location:608 → 671
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cl02808
      Location:2490 → 2754
      RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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