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    ccl25a chemokine (C-C motif) ligand 25a [ Lates calcarifer (barramundi perch) ]

    Gene ID: 108884190, updated on 10-Apr-2024

    Summary

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    Gene symbol
    ccl25a
    Gene description
    chemokine (C-C motif) ligand 25a
    See related
    EnsemblRapid:ENSLCAG00010017138
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lates calcarifer
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
    Orthologs
    zebrafish all
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    Genomic context

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    Location:
    chromosome: LG4
    Exon count:
    5
    Annotation release Status Assembly LG Location
    RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG4 NC_066836.1 (7400817..7403114)
    100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363893.1 (734911..737161, complement)

    Linkage Group LG4 - NC_066836.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108884133 Neighboring gene uncharacterized LOC108884194 Neighboring gene RAN binding protein 3b Neighboring gene serine/threonine-protein kinase NIM1-like Neighboring gene pinhead

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR chemokine receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chemokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to interleukin-1 IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to tumor necrosis factor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to type II interferon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lymphocyte chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monocyte chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neutrophil chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of ERK1 and ERK2 cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-C motif chemokine 25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TLL_Latcal_v3 Primary Assembly

    Genomic

    1. NC_066836.1 Reference TLL_Latcal_v3 Primary Assembly

      Range
      7400817..7403114
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018677904.2 → XP_018533420.1  C-C motif chemokine 25

      UniProtKB/TrEMBL
      A0A4W6ECM3, A0A4W6EFV4
      Related
      ENSLCAP00010036578.1, ENSLCAT00010037432.2

    2. XM_018677905.2 → XP_018533421.1  C-C motif chemokine 25

      UniProtKB/TrEMBL
      A0A4W6ECM3, A0A4W6EFV4
    Nucleotide Protein
    Heading Accession and Version

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