Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    slco3a1a solute carrier organic anion transporter family member 3A1a [ Danio rerio (zebrafish) ]

    Gene ID: 569735, updated on 16-Oct-2021

    Summary

    Official Symbol
    slco3a1aprovided by ZNC
    Official Full Name
    solute carrier organic anion transporter family member 3A1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8662
    See related
    Ensembl:ENSDARG00000018726
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    slco3a1; wu:fa93e11; si:ch211-196l7.1
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See slco3a1a in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (25073984..25176869, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (25087452..25190337, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 18 NC_007129.5 (24856598..24960940, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 174 member B Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 Neighboring gene si:dkeyp-59c12.1 Neighboring gene perilipin 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables sodium-independent organic anion transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in prostaglandin transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in sodium-independent organic anion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    solute carrier organic anion transporter family member 3A1
    Names
    Oatp3a1
    solute carrier organic anion transporter family, member 3A1
    zOatp3a2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045188.2NP_001038653.1  solute carrier organic anion transporter family member 3A1

      Status: PROVISIONAL

      Source sequence(s)
      BX649578, BX901968
      UniProtKB/TrEMBL
      Q1LV73
      Related
      ENSDARP00000020823.8, ENSDART00000013363.9
      Conserved Domains (3) summary
      cd06174
      Location:35265
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      cd01330
      Location:449506
      KAZAL_SLC21; The kazal-type serine protease inhibitor domain has been detected in an extracellular loop region of solute carrier 21 (SLC21) family members (organic anion transporters) , which may regulate the specificity of anion uptake. The KAZAL_SLC21 domain is a ...
      pfam03137
      Location:29614
      OATP; Organic Anion Transporter Polypeptide (OATP) family

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      25073984..25176869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center