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    RUFY3 RUN and FYVE domain containing 3 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 461275, updated on 3-Apr-2024

    Summary

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    Official Symbol
    RUFY3provided by VGNC
    Official Full Name
    RUN and FYVE domain containing 3provided by VGNC
    Primary source
    VGNC:VGNC:12969
    Locus tag
    CK820_G0003443
    See related
    Ensembl:ENSPTRG00000016135
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (59342156..59446068, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (59342130..59446053, complement)

    Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene G-rich RNA sequence binding factor 1 Neighboring gene small nucleolar RNA U13 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein RUFY3
    Names
    rap2 interacting protein x

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      59342156..59446068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009447769.5 → XP_009446044.1  protein RUFY3 isoform X6

      UniProtKB/TrEMBL
      A0A2I3RE75
      Conserved Domains (5) summary
      cd15744
      Location:589 → 635
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam01442
      Location:332 → 505
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:161 → 284
      RUN; RUN domain
      pfam05038
      Location:21 → 64
      Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
      pfam15960
      Location:400 → 556
      DUF4763; Domain of unknown function (DUF4763)

    2. XM_009447767.5 → XP_009446042.1  protein RUFY3 isoform X2

      Conserved Domains (5) summary
      cd15744
      Location:620 → 666
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam01442
      Location:332 → 505
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:161 → 284
      RUN; RUN domain
      pfam05038
      Location:21 → 64
      Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
      pfam15960
      Location:400 → 556
      DUF4763; Domain of unknown function (DUF4763)

    3. XM_054683026.2 → XP_054539001.1  protein RUFY3 isoform X1

    4. XM_054683028.2 → XP_054539003.1  protein RUFY3 isoform X4

    5. XM_054683035.2 → XP_054539010.1  protein RUFY3 isoform X13

    6. XM_001160004.6 → XP_001160004.1  protein RUFY3 isoform X8

      See identical proteins and their annotated locations for XP_001160004.1

      UniProtKB/TrEMBL
      A0A2I3RE75, A0A2J8PF78, A0A6D2VSC3, H2RA52
      Related
      ENSPTRP00000053507.1
      Conserved Domains (3) summary
      cd15744
      Location:562 → 608
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam02759
      Location:103 → 224
      RUN; RUN domain
      cl25732
      Location:254 → 538
      SMC_N; RecF/RecN/SMC N terminal domain

    7. XM_009447770.4 → XP_009446045.1  protein RUFY3 isoform X7

      See identical proteins and their annotated locations for XP_009446045.1

      UniProtKB/TrEMBL
      A0A2I3RE75, A0A2I3TSU6
      Related
      ENSPTRP00000092298.1
      Conserved Domains (2) summary
      cd15744
      Location:580 → 626
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam02759
      Location:121 → 244
      RUN; RUN domain

    8. XM_063809586.1 → XP_063665656.1  protein RUFY3 isoform X15

      UniProtKB/TrEMBL
      A0A2J8PF96

    9. XM_063809584.1 → XP_063665654.1  protein RUFY3 isoform X5

    10. XM_054683027.2 → XP_054539002.1  protein RUFY3 isoform X3

    11. XM_063809585.1 → XP_063665655.1  protein RUFY3 isoform X11

    12. XM_054683034.2 → XP_054539009.1  protein RUFY3 isoform X12

    13. XM_054683030.2 → XP_054539005.1  protein RUFY3 isoform X9

    14. XM_054683031.2 → XP_054539006.1  protein RUFY3 isoform X10

    15. XM_054683036.2 → XP_054539011.1  protein RUFY3 isoform X14

    16. XM_009447777.4 → XP_009446052.1  protein RUFY3 isoform X18

      See identical proteins and their annotated locations for XP_009446052.1

      UniProtKB/TrEMBL
      A0A2J8PF85, A0A2J8PF98, A0A6D2XJH7, K7AUE1
      Related
      ENSPTRP00000077015.1
      Conserved Domains (2) summary
      COG1196
      Location:258 → 464
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam02759
      Location:103 → 224
      RUN; RUN domain

    17. XM_009447776.4 → XP_009446051.1  protein RUFY3 isoform X17

      See identical proteins and their annotated locations for XP_009446051.1

      UniProtKB/TrEMBL
      A0A2J8PF85
      Conserved Domains (2) summary
      COG1196
      Location:276 → 482
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam02759
      Location:121 → 242
      RUN; RUN domain

    18. XM_063809587.1 → XP_063665657.1  protein RUFY3 isoform X19

    19. XM_054683037.2 → XP_054539012.1  protein RUFY3 isoform X16

    RNA

    1. XR_010156579.1 RNA Sequence

    2. XR_010156576.1 RNA Sequence

    3. XR_010156578.1 RNA Sequence

    4. XR_010156577.1 RNA Sequence

    5. XR_010156582.1 RNA Sequence

    6. XR_008547524.2 RNA Sequence

    7. XR_010156581.1 RNA Sequence

    8. XR_010156583.1 RNA Sequence

    9. XR_010156580.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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