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    RUFY3 RUN and FYVE domain containing 3 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 461275, updated on 24-Apr-2021

    Summary

    Official Symbol
    RUFY3provided by VGNC
    Official Full Name
    RUN and FYVE domain containing 3provided by VGNC
    Primary source
    VGNC:VGNC:12969
    Locus tag
    CK820_G0003443
    See related
    Ensembl:ENSPTRG00000016135
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
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    Genomic context

    See RUFY3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 4 NC_036883.1 (58434023..58537953, complement)
    104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 4 NC_006471.4 (59805768..59909657, complement)

    Chromosome 4 - NC_036883.1Genomic Context describing neighboring genes Neighboring gene G-rich RNA sequence binding factor 1 Neighboring gene small nucleolar RNA U13 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene joining chain of multimeric IgA and IgM

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    protein RUFY3
    Names
    rap2 interacting protein x

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036883.1 Reference Clint_PTRv2 Primary Assembly

      Range
      58434023..58537953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009447769.3XP_009446044.1  protein RUFY3 isoform X3

      Conserved Domains (5) summary
      cd15744
      Location:589635
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam01442
      Location:332505
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:161284
      RUN; RUN domain
      pfam05038
      Location:2164
      Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
      pfam15960
      Location:400556
      DUF4763; Domain of unknown function (DUF4763)
    2. XM_009447768.3XP_009446043.1  protein RUFY3 isoform X2

      Conserved Domains (5) summary
      cd15744
      Location:609643
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam01442
      Location:332505
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:161284
      RUN; RUN domain
      pfam05038
      Location:2164
      Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
      pfam15960
      Location:400556
      DUF4763; Domain of unknown function (DUF4763)
    3. XM_009447767.3XP_009446042.1  protein RUFY3 isoform X1

      Conserved Domains (5) summary
      cd15744
      Location:620666
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam01442
      Location:332505
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:161284
      RUN; RUN domain
      pfam05038
      Location:2164
      Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
      pfam15960
      Location:400556
      DUF4763; Domain of unknown function (DUF4763)
    4. XM_001160004.4XP_001160004.1  protein RUFY3 isoform X5

      See identical proteins and their annotated locations for XP_001160004.1

      UniProtKB/TrEMBL
      H2RA52
      Related
      ENSPTRP00000053507.1
      Conserved Domains (3) summary
      cd15744
      Location:562608
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam02759
      Location:103224
      RUN; RUN domain
      cl25732
      Location:254538
      SMC_N; RecF/RecN/SMC N terminal domain
    5. XM_009447774.3XP_009446049.1  protein RUFY3 isoform X8

      Conserved Domains (3) summary
      COG1196
      Location:192432
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd15744
      Location:498544
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam02759
      Location:39160
      RUN; RUN domain
    6. XM_016951611.2XP_016807100.1  protein RUFY3 isoform X7

      Conserved Domains (3) summary
      cd15744
      Location:509555
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam02759
      Location:50171
      RUN; RUN domain
      cl25732
      Location:201485
      SMC_N; RecF/RecN/SMC N terminal domain
    7. XM_009447770.2XP_009446045.1  protein RUFY3 isoform X4

      See identical proteins and their annotated locations for XP_009446045.1

      Related
      ENSPTRP00000092298.1, ENSPTRT00000097672.1
      Conserved Domains (2) summary
      cd15744
      Location:580626
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam02759
      Location:121244
      RUN; RUN domain
    8. XM_009447771.3XP_009446046.1  protein RUFY3 isoform X6

      Conserved Domains (4) summary
      pfam01442
      Location:332505
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:161284
      RUN; RUN domain
      pfam05038
      Location:2164
      Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
      pfam15960
      Location:400556
      DUF4763; Domain of unknown function (DUF4763)
    9. XM_009447775.3XP_009446050.1  protein RUFY3 isoform X9

      Related
      ENSPTRP00000084122.1
      Conserved Domains (4) summary
      pfam01442
      Location:332504
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:161284
      RUN; RUN domain
      pfam05038
      Location:2164
      Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
      pfam16043
      Location:325466
      DUF4795; Domain of unknown function (DUF4795)
    10. XM_024356134.1XP_024211902.1  protein RUFY3 isoform X10

      Conserved Domains (3) summary
      pfam02759
      Location:161282
      RUN; RUN domain
      cl25732
      Location:316522
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26464
      Location:5100
      Atrophin-1; Atrophin-1 family
    11. XM_009447777.2XP_009446052.1  protein RUFY3 isoform X12

      See identical proteins and their annotated locations for XP_009446052.1

      UniProtKB/TrEMBL
      K7AUE1
      Related
      ENSPTRP00000077015.1, ENSPTRT00000108274.1
      Conserved Domains (2) summary
      COG1196
      Location:258464
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam02759
      Location:103224
      RUN; RUN domain
    12. XM_009447776.2XP_009446051.1  protein RUFY3 isoform X11

      See identical proteins and their annotated locations for XP_009446051.1

      Conserved Domains (2) summary
      COG1196
      Location:276482
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam02759
      Location:121242
      RUN; RUN domain
    13. XM_024356135.1XP_024211903.1  protein RUFY3 isoform X13

      Conserved Domains (2) summary
      pfam02759
      Location:50171
      RUN; RUN domain
      cl25732
      Location:203411
      SMC_N; RecF/RecN/SMC N terminal domain

    RNA

    1. XR_679640.3 RNA Sequence

    2. XR_679642.3 RNA Sequence

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