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    yjdM zinc ribbon domain-containing protein YjdM [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948621, updated on 4-Apr-2024

    Summary

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    Gene symbol
    yjdM
    Gene description
    zinc ribbon domain-containing protein YjdM
    Primary source
    ASAP:ABE-0013451
    Locus tag
    b4108
    See related
    ECOCYC:EG10711
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4101; phnA
    Summary
    AFMB Structural Genomics target Number 17 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG10711]. The phn genes of Escherichia coli B have been cloned . [More information is available at EcoCyc: EG10711].
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    Genomic context

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    Sequence:
    NC_000913.3 (4326399..4326734, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphonate/phosphate ABC transporter ATP binding subunit Neighboring gene PF06983 family protein YjdN Neighboring gene regulator of diguanylate cyclase RdcA Neighboring gene regulator of diguanylate cyclase RdcB Neighboring gene osmolyte:H(+) symporter ProP

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for a fourteen-gene, phnC to phnP locus for phosphonate metabolism in Escherichia coli. Metcalf WW, et al. Gene, 1993 Jul 15. PMID 8335257
    2. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    3. Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12. Makino K, et al. J Bacteriol, 1991 Apr. PMID 1840580, Free PMC Article
    4. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532
    5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc ribbon domain-containing protein YjdM

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4326399..4326734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418532.1 zinc ribbon domain-containing protein YjdM [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418532.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A066T2B7, A0A1X3HXQ5, A0A1X3J6R2, A0A1X3J979, A0A829L587, A0A9X6EIT0, A0AA86WKS8, B1LQC6, D8AFF1, E1IV88, E1J3C6, E6BPP6, F4T7G1, F4TP12, F4V9D2, F4VM96, V0AKA5
      Conserved Domains (1) summary
      PRK10220
      Location:1 → 111
      PRK10220; phnA family protein
    Nucleotide Protein
    Heading Accession and Version

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