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    UBTF upstream binding transcription factor [ Cyanistes caeruleus (blue tit) ]

    Gene ID: 111939937, updated on 15-Mar-2024

    Summary

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    Gene symbol
    UBTF
    Gene description
    upstream binding transcription factor
    See related
    Ensembl:ENSCCEG00000021928
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyanistes caeruleus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Cyanistes
    Orthologs
    human mouse all
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    Genomic context

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    See UBTF in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current cyaCae2 (GCF_002901205.1) 27 Unlocalized Scaffold NW_019776548.1 (2972588..2982579, complement)

    NW_019776548.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 2, mitochondrial-like Neighboring gene LSM12 homolog Neighboring gene glucose-6-phosphatase catalytic subunit 3 Neighboring gene solute carrier family 4 member 1 (Diego blood group) Neighboring gene RUN domain containing 3A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019776548 Chromosome 27 Unlocalized Scaffold Reference cyaCae2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    nucleolar transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference cyaCae2

    Genomic

    1. NW_019776548.1 Reference cyaCae2

      Range
      2972588..2982579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023942431.1 → XP_023798199.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0VQ26
      Conserved Domains (1) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    2. XM_023942432.1 → XP_023798200.1  nucleolar transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0VQ26, A0A8C0VQ51
      Related
      ENSCCEP00000024770.1, ENSCCET00000037138.1
      Conserved Domains (1) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    3. XM_023942433.1 → XP_023798201.1  nucleolar transcription factor 1 isoform X3

      Conserved Domains (1) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    4. XM_023942434.1 → XP_023798202.1  nucleolar transcription factor 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0ZJF8
      Related
      ENSCCEP00000024773.1, ENSCCET00000037141.1
      Conserved Domains (1) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    Nucleotide Protein
    Heading Accession and Version

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