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    LOC101158250 dystrobrevin beta [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101158250, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101158250
    Gene description
    dystrobrevin beta
    See related
    EnsemblRapid:ENSORLG00000017644
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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    Genomic context

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    Location:
    chromosome: 24
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 24 NC_019882.2 (17782481..17830077)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 24 NC_019882.1 (18026082..18074411)

    Chromosome 24 - NC_019882.2Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIF3C Neighboring gene toll-like receptor 5 Neighboring gene DNA (cytosine-5-)-methyltransferase 3 alpha b Neighboring gene dihydropyrimidinase like 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in synaptic signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dystrobrevin beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019882.2 Reference ASM223467v1 Primary Assembly

      Range
      17782481..17830077
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011491982.3 → XP_011490284.1  dystrobrevin beta isoform X1

      See identical proteins and their annotated locations for XP_011490284.1

      UniProtKB/TrEMBL
      A0A3P9MHQ6, H2MTI0
      Related
      ENSORLP00000063287.1, ENSORLT00000090164.1
      Conserved Domains (3) summary
      cd02334
      Location:247 → 295
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      cd16244
      Location:62 → 221
      EFh_DTN; EF-hand-like motif found in dystrobrevins and similar proteins
      cl25732
      Location:367 → 511
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_023952945.1 → XP_023808713.1  dystrobrevin beta isoform X4

      UniProtKB/TrEMBL
      A0A3B3HPE5, A0A3P9L8R0
      Related
      ENSORLP00000033161.1, ENSORLT00000028413.2
      Conserved Domains (3) summary
      cd02334
      Location:247 → 295
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      cd16244
      Location:62 → 221
      EFh_DTN; EF-hand-like motif found in dystrobrevins and similar proteins
      cl25732
      Location:367 → 511
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_023952944.1 → XP_023808712.1  dystrobrevin beta isoform X3

      UniProtKB/TrEMBL
      H2MTI0
      Related
      ENSORLP00000086621.1, ENSORLT00000067040.1
      Conserved Domains (3) summary
      cd02334
      Location:247 → 295
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      cd16244
      Location:62 → 221
      EFh_DTN; EF-hand-like motif found in dystrobrevins and similar proteins
      cl25732
      Location:367 → 511
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_011491984.3 → XP_011490286.1  dystrobrevin beta isoform X1

      See identical proteins and their annotated locations for XP_011490286.1

      UniProtKB/TrEMBL
      A0A3P9MHQ6, H2MTI0
      Conserved Domains (3) summary
      cd02334
      Location:247 → 295
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      cd16244
      Location:62 → 221
      EFh_DTN; EF-hand-like motif found in dystrobrevins and similar proteins
      cl25732
      Location:367 → 511
      SMC_N; RecF/RecN/SMC N terminal domain

    5. XM_023952943.1 → XP_023808711.1  dystrobrevin beta isoform X2

      UniProtKB/TrEMBL
      A0A3P9MHQ6, H2MTI0, H2MTI1
      Related
      ENSORLP00000028258.1, ENSORLT00000033919.2
      Conserved Domains (3) summary
      cd02334
      Location:247 → 295
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      cd16244
      Location:62 → 221
      EFh_DTN; EF-hand-like motif found in dystrobrevins and similar proteins
      cl25732
      Location:367 → 511
      SMC_N; RecF/RecN/SMC N terminal domain

    6. XM_011491983.3 → XP_011490285.1  dystrobrevin beta isoform X1

      See identical proteins and their annotated locations for XP_011490285.1

      UniProtKB/TrEMBL
      A0A3P9MHQ6, H2MTI0
      Conserved Domains (3) summary
      cd02334
      Location:247 → 295
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      cd16244
      Location:62 → 221
      EFh_DTN; EF-hand-like motif found in dystrobrevins and similar proteins
      cl25732
      Location:367 → 511
      SMC_N; RecF/RecN/SMC N terminal domain

    7. XM_020714425.2 → XP_020570084.1  dystrobrevin beta isoform X1

      UniProtKB/TrEMBL
      A0A3P9MHQ6, H2MTI0
      Conserved Domains (3) summary
      cd02334
      Location:247 → 295
      ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
      cd16244
      Location:62 → 221
      EFh_DTN; EF-hand-like motif found in dystrobrevins and similar proteins
      cl25732
      Location:367 → 511
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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