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    Obp56g Odorant-binding protein 56g [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37270, updated on 10-May-2024

    Summary

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    Official Symbol
    Obp56gprovided by FlyBase
    Official Full Name
    Odorant-binding protein 56gprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034474
    Locus tag
    Dmel_CG13873
    See related
    AllianceGenome:FB:FBgn0034474
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    56g; CG13873; DmelObp56g; Dmel\CG13873; OBP56g
    Summary
    Predicted to enable odorant binding activity. Involved in multicellular organism reproduction. Located in extracellular space. Is expressed in adult head; embryonic antennal sense organ; embryonic maxillary sensory complex; labellar taste bristle; and labellum. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See Obp56g in Genome Data Viewer
    Location:
    56E3-56E3; 2-90 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (19783484..19784043, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (15670989..15671548, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene Odorant receptor 56a Neighboring gene long non-coding RNA:CR45231 Neighboring gene transfer RNA:Lysine-CTT 1-11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome profiling reveals tissue-specific protein expression in the male reproductive system of Drosophila melanogaster. Yamamoto MT, et al. Fly (Austin), 2010 Jan-Mar. PMID 20139713
    2. Aging and Autophagic Function Influences the Progressive Decline of Adult Drosophila Behaviors. Ratliff EP, et al. PLoS One, 2015. PMID 26182057, Free PMC Article
    3. Female influence on pre- and post-copulatory sexual selection and its genetic basis in Drosophila melanogaster. Giardina TJ, et al. Mol Ecol, 2011 Oct. PMID 21902747, Free PMC Article
    4. An odorant-binding protein required for suppression of sweet taste by bitter chemicals. Jeong YT, et al. Neuron, 2013 Aug 21. PMID 23972598, Free PMC Article
    5. Association of polymorphisms in odorant-binding protein genes with variation in olfactory response to benzaldehyde in Drosophila. Wang P, et al. Genetics, 2007 Nov. PMID 17720903, Free PMC Article

    See all (45) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The seminal odorant binding protein Obp56g is required for mating plug formation and male fertility in Drosophila melanogaster.
      Title: The seminal odorant binding protein Obp56g is required for mating plug formation and male fertility in Drosophila melanogaster.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables odorant binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sensory perception of chemical stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in sensory perception of smell IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sexual reproduction HEP PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in extracellular space HDA PubMed 

    General protein information

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    Preferred Names
    Odorant-binding protein 56g
    Names
    CG13873-PA
    CG13873-PB
    Obp56g-PA
    Obp56g-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      19783484..19784043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137603.3 → NP_611447.1  Odorant-binding protein 56g, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611447.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1ZBQ3, A9QI24, A9QI48, A9QI64
      Related
      FBpp0085644
      Conserved Domains (1) summary
      pfam01395
      Location:29 → 130
      PBP_GOBP; PBP/GOBP family

    2. NM_206181.3 → NP_995903.1  Odorant-binding protein 56g, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_995903.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1ZBQ4, A9QI24, A9QI48, A9QI64
      Conserved Domains (1) summary
      pfam01395
      Location:30 → 131
      PBP_GOBP; PBP/GOBP family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1ZBQ3 A1ZBQ3
    A1ZBQ4 A1ZBQ4

    Gene LinkOut

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