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    palb2 partner and localizer of BRCA2 [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115539873, updated on 17-Mar-2024

    Summary

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    Gene symbol
    palb2
    Gene description
    partner and localizer of BRCA2
    See related
    Ensembl:ENSGMOG00000030234
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    human zebrafish all
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    Genomic context

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    See palb2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 3 NC_044050.1 (19582347..19590235, complement)

    Chromosome 3 - NC_044050.1Genomic Context describing neighboring genes Neighboring gene RASD family member 3 Neighboring gene polo-like kinase 1 (Drosophila) Neighboring gene collagen alpha-1(XI) chain-like Neighboring gene retinol dehydrogenase 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044050.1 Chromosome 3 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Atlantic cod reveals a unique immune system. Star B, et al. Nature, 2011 Aug 10. PMID 21832995, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    partner and localizer of BRCA2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044050.1 Reference gadMor3.0 Primary Assembly

      Range
      19582347..19590235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030350730.1 → XP_030206590.1  partner and localizer of BRCA2 isoform X2

      Conserved Domains (2) summary
      PHA03247
      Location:921 → 1112
      PHA03247; large tegument protein UL36; Provisional
      pfam16756
      Location:1097 → 1436
      PALB2_WD40; Partner and localizer of BRCA2 WD40 domain

    2. XM_030350728.1 → XP_030206588.1  partner and localizer of BRCA2 isoform X1

      UniProtKB/TrEMBL
      A0A8C5BFK8
      Conserved Domains (2) summary
      PHA03247
      Location:922 → 1113
      PHA03247; large tegument protein UL36; Provisional
      pfam16756
      Location:1098 → 1437
      PALB2_WD40; Partner and localizer of BRCA2 WD40 domain

    3. XM_030350729.1 → XP_030206589.1  partner and localizer of BRCA2 isoform X1

      UniProtKB/TrEMBL
      A0A8C5BFK8
      Related
      ENSGMOP00000045626.1, ENSGMOT00000068234.1
      Conserved Domains (2) summary
      PHA03247
      Location:922 → 1113
      PHA03247; large tegument protein UL36; Provisional
      pfam16756
      Location:1098 → 1437
      PALB2_WD40; Partner and localizer of BRCA2 WD40 domain

    RNA

    1. XR_003976052.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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